Archived Highlights

Neurons December 7, 2010

Scientists Uncover New Process Regulating Electrical Firing Properties of Neurons

Neurons in the brain communicate with each other using a combination of carefully regulated chemical and electrical signals. NIH Director’s Pioneer Award recipient Dr. James Eberwine and colleagues at the University of Pennsylvania and Sequenom, Inc. have discovered a novel method by which neurons selectively express proteins that control their electrical properties , reported in the December 7, 2010 issue of the Proceedings of the National Academy of Sciences. In neurons, electrical signals are controlled by channel proteins that create a pore in the cell membrane to allow positively or negatively charged ions to flow in and out of the cell. One of these channel proteins, called BKCa, helps regulate electrical signals in the hippocampus, an area of the brain that is important for learning and memory. Interestingly, the hippocampus is also the focus of many epileptic seizures, which result from disturbances in the electrical firing of neurons. The BKCa channel protein has several different variations. These protein variations arise during a cellular process called “splicing,” which is analogous to the process of cutting an undesired segment out of an audiotape and joining the resulting ends together. To make a protein, a cell must identify the piece of DNA that contains the instructions for the protein (called a gene), copy the DNA into another form of genetic material, called RNA, and then use the information encoded in the RNA to make the protein. Often, the instructions in the DNA for making a protein are not in a continuous stretch, but contain intervening sequences or “introns.” After the DNA is copied into RNA, these introns are removed and the flanking coding sequences, or “exons,” are connected to each other. It is the sequence of merged exons that tells the cell how to make a protein. Since the RNA can be spliced in different ways, one gene sequence can be used to make several different protein variants, depending on which exons are included. Normally splicing takes place in the nucleus of a cell, the cell’s control center where the DNA is stored. However, previous work from Dr. Eberwine’s lab has shown that splicing can also occur outside the nucleus, in a neuron’s cytoplasm. Dr. Eberwine’s latest paper demonstrates for the first time that one of the introns removed during cytoplamic splicing can regulate which form of BKCa channel protein is made, which in turn affects important electrical properties of the neuron. While introns used to be considered “junk DNA,” a number of studies, including Dr. Eberwine’s papers, are demonstrating that introns play crucial regulatory roles. Studying the process of splicing and intron removal in the production of BKCa channels may provide new insights about disorders of neuronal misfiring, such as epilepsy.

Reference:

Bell TJ, Miyashiro KY, Sul JY, Buckley PT, Lee MT, McCullough R, Jochems J, Kim J, Cantor CR, Parsons TD, Eberwine JH. Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations. Proceedings of the National Academy of Sciences, 2010 Dec 7; 107(49): 21152-7. PMID: 21078998.




 
Handbook

Handbook for Small Molecule Probes

The Molecular Libraries Program (MLP), a component of the NIH Common Fund, offers public sector biomedical researchers access to the large-scale screening capacity necessary to identify small molecules that can be optimized as chemical probes to study the functions of genes, cells, and biochemical pathways. This will lead to new ways to explore the functions of genes and signaling pathways in health and disease.

The Molecular Libraries Probe Production Centers Network (MLPCN), as part of the MLP, is a nationwide consortium of small molecule centers that produces innovative chemical tools for use in biological research. The MLPCN solicits novel assays from the research community for high throughput screening (HTS) against a library of 350,000 chemically diverse small molecules maintained in a central repository (the Molecular Libraries Small Molecule Repository; MLSMR). Validated screening hits are optimized by medicinal chemistry to produce useful in vitro chemical probes. All of the results from the MLPCN’s activities are deposited into an open access database, PubChem, for use in studying biology and disease.

The MLPCN brings together over 100 experienced medicinal chemists from five academic institutions and one NIH intramural center to focus on the development of high quality probes from screening hits. The lead medicinal chemists have extensive industrial experience from both biotech and large pharmaceutical companies. MLPCN probes cover highly diverse targets, biology and disease areas with many probes moving on as potential leads in drug discovery efforts after exiting the MLPCN.

This book brings together structure and biological information on the probes produced by the MLPCN in collaboration with the investigators who provided the screening assays. This information will be periodically updated with new probe information from the active MLPCN Centers.




December 1, 2010

Unlocking the Mysteries of Protein Structure for Better Drug Development

JCIMPT - Complexes Banner

Researcher Uncovers Shape of Protein Important for Neurological Disorders
The Joint Center for Integral Membrane Protein Technologies-Complexes (JCIMPT-Complexes) at the Scripps Research Institute headed by Dr. Raymond C. Stevens, funded in part by the Common Fund's Structural Biology program, has determined the three-dimensional shape of D3R, a protein that binds to dopamine and is implicated in schizophrenia, Parkinson's disease, and drug addiction

Reference:

Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC. Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science 2010 Nov 19; 330(6007): 1091-5. PMID: 21097933.

Researcher Determines Shape of a Protein Important for HIV and Cancer
Dr. Raymond C. Stevens and colleagues at The Joint Center for Integral Membrane Protein Technologies-Complexes (JCIMPT-Complexes) have determined the three-dimensional structure of CXCR4, a cellular protein important for HIV infection as well as the growth and metastasis of many types of cancer.

Reference:

Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC. Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science 2010 Nov 19; 330(6007): 1066-71. PMID: 20929726.


 
ARRA logoNovember 30, 2010

SWEET Discovery for Plants...and Humans

Similar to humans, plants can be sickened by infection with bacteria and other pathogens, resulting in crop losses of over $500 billion every year. In the November 24th online edition of the journal Nature, Dr. Wolf Frommer of the Carnegie Institution and funded in part by the Common Fund’s Metabolomics Technology Development program, has identified how pathogens "hijack" plant cells to steal nutrients for their own use and discovers a potential novel target for blocking a broad range of pathogenic plant infections.

Reference:

Chen LQ, Hou BH, Lalonde S, Takanaga H, Hartung ML, Qu XQ, Guo WJ, Kim JG, Underwood W, Chaudhuri B, Chermak D, Antony G, White FF, Somerville SC, Mudgett MB, Frommer WB. Sugar transporters for intracellular exchange and nutrition of pathogens. Nature, 2010 Nov 25; 468(7323): 527-32. PMID: 21107422.
 


November 22, 2010

NIH Director's Early Independence Award Program


New Compound Prevents Weight Gain in Mice

Dr. Jef Boeke at Johns Hopkins University, funded in part by the Common Fund's Technology Centers for Networks and Pathways (TCNP) program, has designed a compound that reduces weight gain in mice fed a high fat diet. In a paper published in the November 18th advance online edition of the journal Science, Dr. Boeke and colleagues show that the compound, called GO-CoA-Tat, interferes with the action of ghrelin, a hormone released from the gut that promotes weight gain. In order to function, ghrelin must be activated by another protein called GOAT (ghrelin O-acyltransferase). However, GO-CoA-Tat binds to GOAT and prevents it from activating ghrelin. Mice injected with GO-CoA-Tat had less activated ghrelin and gained less weight on a high fat diet than mice that received a placebo. Treatment with GO-CoA-Tat also improved the insulin response of the mice to a dose of glucose, a test similar to that used in humans to diagnose diabetes. Interestingly, mice treated with GO-CoA-Tat ate the same amount as mice treated with placebo, suggesting that GO-CoA-Tat regulates metabolism and not appetite. This study suggests a potential new drug target for the treatment of disorders such as diabetes, metabolic syndrome, and obesity.

Reference:

Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschop MH, Boeke JD, Cole PA. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science, 2010 Dec 17; 330(6011): 1689-92. Epub 2010 Nov 18. PMID: 21097901.
 
ARRA logoNovember 4, 2010

Common Fund Awards $38.4M in ARRA Funds in Fiscal Year 2010

In fiscal year 2010, the NIH Common Fund made nine new American Investment and Recovery Act (ARRA) awards totaling $38.4M. All nine awards are “Building Sustainable Community-linked Infrastructure to Enable Health Science Research” grants (RC4) and each proposes a highly innovative program of research that cuts across multiple thematic areas for the NIH. Read More...




 
NeuronsOctober 29, 2010

Neurons Filter Out Irrelevant Information

Scientists have discovered how a small subset of neurons in the zebrafish brain has a big impact on an important behavior—the ability to hunt down prey. In a study published in the October 29th issue of Science, Dr. Herwig Baier of UC San Francisco and Dr. Ehud Isacoff of UC Berkeley, investigators in the Common Fund’s Nanomedicine program, use a novel fluorescent reporter of nerve cell activity to uncover how zebrafish can spot a tiny, one-celled paramecium against a complex visual background. The optic tectum in zebrafish is a layered structure that receives signals from the eye in the superficial layer, and sends signals from the deeper layer out to motor areas of the brain that control movement. Drs. Baier and Isacoff and colleagues demonstrate that a group of neurons in the optic tectum called superficial inhibitory neurons (SINs) acts to "filter out" large background patterns, allowing the tectum to send specific messages to motor areas about small, moving objects like prey. Silencing or destroying SINs eliminates this filtering, and impairs the zebrafish’s ability to catch prey. The selective filtering of irrelevant background information is found throughout the brain of many animals, including humans, but relatively little is known about the individual nerve cells that underlie this process. This study offers important insight about how circuits of nerve cells can provide background filtering, and suggests similar mechanisms may be found in human brains.

Reference:

Del Bene F, Wyart C, Robles E, Tran A, Looger L, Scott EK, Isacoff EY, Baier H. Filtering of visual information in the tectum by an identified neural circuit. Science, 2010 Oct 29; 330 (6004): 669-73. PMID: 21030657.




High ThroughputOctober 13, 2010

High Throughput Strategy for Testing Nerve Regeneration

Finding new drugs to promote regeneration of damaged nerve cells holds great promise for diseases such as Alzheimer's disease, spinal cord injury, brain trauma, and more. Many potential treatments, while promising in cell cultures, fail to promote regeneration in living animals. In a paper published October 13th in the Early Edition of the Proceedings of the National Academy of Sciences, Dr. Mehmet Yanik, a researcher at the Massachusetts Institute of Technology and an NIH Director's New Innovator awardee, demonstrates a novel method to rapidly screen potential drugs for their ability to promote nerve regeneration in the nematode C. elegans. Using this method, Dr. Yanik and colleagues discovered that compounds which regulate protein kinase C (PKC), an enzyme important for many different cellular processes, can modulate nerve regeneration after injury in specific neurons. The ability of this method to efficiently screen large numbers of potential drugs in living animals may greatly accelerate the discovery of new treatments to promote nerve regeneration.

Reference:

Samara C, Rohde CB, Gilleland CL, Norton S, Haggarty SJ, Yanik MF. Large-scale in vivo femtosecond laser neurosurgery screen reveals small-molecule enhancer of regeneration. Proceedings of the National Academy of Sciences, 2010 Oct 26; 107(43): 18342-7. Epub 2010 Oct 11. PMID: 20937901.




October 6, 2010

NIH Director's Early Independence Award Program
Join the Discussion on the Early Independence Award Program
Early Independence Awards Jump Start Research Independence

The National Institutes of Health announces the establishment of the NIH Director´s Early Independence Award (EIA) Program, a $60 million, 5-year initiative to support junior investigators in independent academic positions immediately following completion of their graduate research degrees. The NIH expects to issue 10 awards through this program in fall 2011. The EIA Program is intended to support exceptional early career scientists who possess the intellect, scientific creativity, drive, and maturity to flourish independently without the need for traditional post-doctoral training. The EIA grantees will be able to begin highly innovative and bold research programs as early in their careers as possible, increasing productivity and spurring pioneering research. NIH Director, Dr. Francis Collins, speaks out about the new initiative in a commentary in Nature, Vol.467, 7 October 2010.


 
2010

Dual NIH Honors: Two Researchers Receive Pioneer and T-R01 Awards

TrT
Treating a Parkinson's disease- like syndrome in rats using electrical stimulation of the spinal cord.

Miguel A. Nicolelis, M.D., Ph.D., neurobiologist and professor of neurobiology, biomedical engineering, and psychology and neuroscience at Duke University, will use the T-R01 Award to study dorsal spinal column stimulation as a novel alternative treatment of Parkinson's disease that is minimally invasive, easy to perform, and inexpensive. For his research under the Pioneer Award he will develop the first shared brain-controlled virtual reality environment designed to investigate brain-actuating technologies for treating neurological disorders.


Schematic representation depicting specific binding of genomic loci by Zinc Finger proteins, and light-tunable modulation of gene expression.
J. Keith Joung, M.D., Ph.D., pathologist at Massachusetts General Hospital and professor of pathology at Harvard Medical School, is a molecular biologist with interests in protein engineering and molecular recognition. His Pioneer Award research will allow him to pursue developing more efficient methods for the generation, alteration, and differentiation of pluripotent stem cells. These broadly applicable approaches should accelerate the use of human stem cells for modeling of biological systems and for regenerative molecular medicine. His research under the T-R01 Award with fellow team members Paola Arlotta, Ph.D. at Massachusetts General Hospital / Harvard Medical School and Feng Zhang, Ph.D. at Massachusetts Institute of Technology will identify and apply new technologies that use molecular regulators to regenerate specific components of the nervous system and treat neurodegenerative diseases.

 
October 4, 2010

Millions in Common Fund Awards in FY 2010

NIH Common Fund supports new research projects that cut across scientific disciplines and challenges conventional thinking.


Common Fund Awards for FY2010

 
Gut MicrobesSeptember 13, 2010

Gut Microbes Changed by Repeated Antibiotic Use

Repeated use of the antibiotic ciprofloxacin (Cipro) leads to persistent changes in the beneficial microbes of the gut, according to a study by David Relman, a researcher at Stanford University and recipient of an NIH Director's Pioneer Award. While ciprofloxacin usually does not cause gastrointestinal side effects normally associated with disturbance of gut-dwelling bacteria, this research demonstrates the occurrence of more subtle changes in gut microbe composition, such as replacement of some bacterial species with closely related species or eradication of some sub-sets of bacteria, particularly when multiple courses of antibiotics are administered. These long-term, persistent changes in microbe composition raise concerns about the evolution of antibiotic-resistant bacteria as well as chronic changes in pathogen-host interactions in the gut, regulation of host immunity, energy balance, or metabolism.

Reference:

Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proceedings of the National Academy of Sciences, 2011 Mar 15; 108 Suppl 1: 4554-61. Epub 2010 Sep 16. PMID: 20847294.




 
GENDER OF ALCOHOLIC PARENTSJuly 20, 2010

GENDER OF ALCOHOLIC PARENTS AND THEIR CHILDREN AFFECT PREVALENCE OF PSYCHIATRIC ILLNESS

Both the gender of an alcoholic parent and the gender of their children can affect the likelihood of those children developing certain types of psychiatric illness, according to a study by Marc Potenza and colleagues at Yale University School of Medicine, part of the Yale Center for Clinical Investigation supported by the Common Fund's Clinical and Translational Science Awards (CTSAs). While having an alcoholic parent of either gender increases a child's overall risk of developing a psychiatric illness, the risk of certain illnesses was affected by the gender of parent and child. For example, the odds of developing mania were significantly higher when the alcoholic parent and the child were of the same gender—i.e. sons of alcoholic fathers and daughters of alcoholic mothers. Other disorders showed an opposite gender effect—daughters of alcoholic fathers had an increased risk of abusing alcohol compared to sons, while sons of alcoholic mothers had an increased risk of panic disorder compared to daughters. Understanding how gender may influence risk of psychiatric illness in families with parental alcoholism may have important implications for prevention and treatment of at-risk children.

Reference:

Morgan PT, Desai RA, Potenza MN. Gender-related influences of parental alcoholism on the prevalence of psychiatric illnesses: analysis of the National Epidemiologic Survey on Alcohol and Related Conditions. Alcoholism: Clinical and Experimental Research, 2010 Oct; 34(10): 1759-67. Epub 2010 Jul 20. PMID: 20645936.




 
July 8, 2010

New FY11 Common Fund Programs

New research programs, supported through the NIH Common Fund, are being launched in Fiscal Year 2011 to address critical needs and opportunities in a number of cross-cutting areas:

Planning Activities in FY2011


 
A SlipChip designed to screen a protein against 16 different precipitants using the free interface diffusion (FID)  method of crystallization. Reproduced with permission from the ACS.June 17, 2010

Tiny Device Helps View Protein Structure

Dr. Rustem Ismagilov and colleagues at the University of Chicago have engineered a tiny microfluidic device called the “SlipChip” that optimizes the conditions for proteins to form crystals, enabling researchers to study how the proteins function normally in cells and become disrupted in disease. Read more...


 

Overcoming Obstacles in Research Culture: Q&A with Dr. Xavier Cagigas

The Common Fund´s Interdisciplinary Research Consortium proves successful at facilitating interdisciplinary approaches that dissolve academic department boundaries within academic institutions, increase cooperation between institutions, train scientists working at the interface of disciplines, and build bridges between biological sciences and behavioral and social sciences. Read the story...




 
Innovative Approaches to Study Complex Signaling Pathways in CellsMarch 2010

Innovative Approaches to Study Complex Signaling Pathways in Cells

Researchers at John Hopkins University, led by Dr. Toru Komatsu and supported through the Common Fund’s Molecular Libraries and Imaging program, have developed a novel system to target and perturb specific molecular activities and communications pathways within cells. The technique may help elucidate the structure and function of complex signaling networks that perform basic functions within cells and may someday be targeted in disease therapies. The work was published in the journal Nature Methods (2010, 7(3):206-208).

 


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2010

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Division of Program Coordination, Planning, and Strategic Initiatives  •  National Institutes of Health  •  Bethesda, Maryland 20892