The 2nd Epigenome Informatics Workshop
September 9th – 11th, 2010 in Houston, Texas

Thursday, Sep 10th 2010

8:30 am	Registration & Continental Breakfast in the Cafe
9:00 am	Opening. Aleksandar Milosavljevic
9:05 am	Participant's Introduction
9:35 am	Module 1 - Intro to Workshop and EDACC. Aleksandar Milosavljevic
10:00 am	Module 2 - Methods for methylation mapping. Alan Harris
10:30 am	15min break
10:45 am	Module 3 - Metadata Validation and Data Submission. Alan Harris
12 noon	Lunch in the Cafe
1:00 pm	Module 4 - Analysis pipelines. Cristian Coarfa
2:30 pm	Kim Andrews introduces BluBioU (optional)
2:45 pm	15min break
3:00 pm	Module 5 - Quality Control. Cristian Coarfa
4:30 pm	Adjourn
6:00 pm	Dinner at Cielo’s Mexican Bistro - attendance optional Meet in the lobby of the Marriott to take the train to Downtown Houston Reservation is for 6.30pm / see menu at back of this packet 300 Main Street – Preston Rail Station

Friday, Sep 10th 2010

8.30 am	Continental Breakfast in Cafe
9:00 am	Module 6 - Genboree and Epigenome Comparison. Aleksandar Milosavljevic
10:30 am	15min break
10:45 am	Module 7 - Epigenome Comparison. Aleksandar Milosavljevic
12 noon	Lunch in the Cafe
1:00 pm	Module 8 - Using Genboree REST APIs . Andrew Jackson
2:00 pm	Module 9 - Case study: exploring collaboration between EDACC and a disease project. Leo Schalkwyk and Cristian Coarfa
3:00 pm	15min break
3:15 pm	Participant Presentations - "Methods and tools for comparative and integrative analysis of epigenomic data." Mukaila Akinbami
3:45pm	Participant Presentations - "Methods and tools for comparative and integrative analysis of epigenomic data." Qiang Jing
4:15 pm	Discussion
5:00 pm	Adjourn

Saturday, Sep 11th 2010

8.30 am	Continental Breakfast in Cafe
9:00 am	Participant Presentations - "Distance based methylation enrichment in cancer as an alternative approach for unseeded de novo motif discovery." Marc Jung
9:30 am	Participant Presentations - "Combining DNA methylation data with gene expression data." Lauren Mills
10:00 am	Feedback on the workshop by workshop participants
10:45 am	Discussion: Future interaction between EDACC and Epigenomics Roadmap Disease projects
11:15 am	Conclusions and Closing Remarks. Aleksandar Milosavljevic
11:30 am	Adjourn

Workshop Modules and Presentations

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