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The 3rd Epigenome Informatics Workshop

March 5th – 6th, 2011 in Houston, Texas

Monday, March 5th 2011

8:15 – 9:00 am Badge pickup & continental breakfast (outside auditorium)
Session 1
9:00 – 9:15 am Introduction to the Workshop – Aleks Milosavljevic
9:15 – 10:00 am Introduction to Case Studies and Genboree – Aleks Milosavljevic
Session 2
10:00 – 1:00 pm Case Studies: Epigenomic Variation between Tissues (Part 1 of 3) – Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic
1:00 – 2:00 pm Boxed lunch (outside auditorium)
Session 3
2:00 – 3:30 pm Case Studies: Epigenomic Variation between Individuals (Part 2 of 3) – Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic
3:30 - 3:45 pm Break
Session 4
3:45 – 5:00 pm Case Studies: Epigenomic Variation in Cancer (Part 3 of 3) –
Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic
6:00 pm Depart for Houston Livestock Show & Rodeo or dinner on your

 

Tuesday, March 6th 2011

8:30 – 9:00 am Continental Breakfast (outside auditorium)
Session 5
9:00 – 10:30 am Review of Case Studies from previous day
10:30 - 10:45 pm Break
Session 6
10:45 – 11:30 am NIH Roadmap best practices (experimental protocols, data analysis protocols, metadata standards, interoperability) –Aleks Milosavljevic (EDACC)
11:30 – 1:00 pm Quantitative profiling of histone modifications, peak calling and segmentation of epigenomic signals, and small RNA analysis – Cristi Coarfa (EDACC)
1:00 – 2:00 pm Boxed lunch (outside auditorium)
Session 7
2:00 – 2:30 pm Whole-genome bisulfite sequencing: comparative analysis of programs for mapping bisulfite reads – Govind K Ramamoorthy (EDACC, Rob Waterland laboratory)
2:30 – 3:00 pm Methylome mapping using Illumina Human Methylome 450K arrays
(Bekim Sadikovic, Art Beaudet Laboratory)
3:00 – 3:30 pm Methylome mapping using MeDIP-seq and RRBS and analysis of allelic
imbalances (Alan Harris, EDACC)
3:30 – 3:45 pm Break
Session 8
3:45 – 4:45 pm Open Discussion topic(s): to be determined during the workshop
4:45 – 5:00 pm Wrap-up
5:00 pm Adjourn

 

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