The 4th Epigenome Informatics Workshop
May 17th – 18th, 2012 in Houston, Texas

Thursday, March 17th 2012

8:15 – 9:00 am	Badge pickup & continental breakfast (outside Kleberg Auditorium in the Alkek Graduate School Building)
Session 1
9:00 – 9:45 am	Introduction to the Workshop, Epigenome Analysis and Genboree – Matt Roth
Session 2
9:45 – 10:45 am	Use case preparation – Setting up projects, databases, groups, accessing files, user privileges, navigating Genboree, toolsets, submitting jobs, etc (BRL staff)
10:45 - 11:00 am	Break
11:00 – 1:00 pm	Hands-on Case Studies: Epigenomic Variation between Tissues (Part 1 of 3) – (BRL staff)
1:00 – 2:00 pm	Boxed lunch (outside auditorium)
Session 3
2:00 – 3:30 pm	Hands-on Case Studies: Epigenomic Variation between Individuals (Part 2 of 3) (BRL staff)
3:30 - 5:00 pm	Hands-on Case Studies: Epigenomic Variation in Cancer (Part 3 of 3) (BRL staff)
6:30 pm	Depart for dinner as group (location TBD) or dinner on your own

Friday, May 18th 2012

8:30 – 9:00 am	Continental Breakfast (outside auditorium)
Session 4
9:00 – 9:15 am	Review of Day 1 and preview of Day 2 - Matt Roth
9:15 – 10:00 am	Quantitative profiling of histone modifications, peak calling and segmentation of epigenomic signals, RNA-seq, Chip-seq – Cristi Coarfa (EDACC)
10:00 – 12:00 pm	Hands-on Case Study: RNA-seq Analysis (BRL staff)
12:00 - 1:00 pm	Boxed lunch (outside auditorium)
Session 5
1:00 – 2:30 pm	Hands-on Case Study: Chip-seq analysis (BRL staff)
2:30 – 3:00 pm	Hands-on Case Study: Virtual data integration using Genboree (BRL staff)
3:00 – 4:30 pm	Hands-on: semi-structured time for completing data analysis/case studies, informal discussions, and feedback from users on practical changes that can improve tools (BRL staff)
4:30 – 5:00 pm	Open discussion and wrap-up
5:00 pm	Adjourn

FAQs
Use Cases

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