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Agenda

JANUARY 4, 2005
Entire Webcast Video of Day One
8:30 Allen Spiegel, Director NIDDK, Co-Chair, Building Blocks, Biological Pathways and Networks roadmap implementation committee
Webcast Video
8:40 Francis Collins, Director, NHGRI, Co-Chair, Building Blocks, Biological Pathways and Networks roadmap implementation committee
Webcast Video
SESSION 1
PROCESSING OF PROTEOMIC DATA GENERATED BY LC-MS/MS

Chair Ruedi Aebersold
8:50 Jef Boeke, Johns Hopkins University
Requirements for making proteomic data useful in biology
Webcast Video
9:25 Ruedi Aebersold, ETH Honggerberg
State of the art and problems in proteomic standards using MS-MS
Webcast Video
10:00 Ronald Beavis, Beavis Informatics Ltd.
Sequence database tools
Webcast Video3
10:45 Alexey Nesvizhskii, Institute for Systems Biology
Statistical validation of database search results
Webcast Video
11:20 John Yates, The Scripps Research Institute
Shotgun proteomics and standard issues
Webcast Video
11:55 Discussion 1
Discussants:
Katheryn Resing, University of Colorado
Alfred Yergey, National Institute of Child Health and Human Development
Richard Simpson, Ludwig Institute
Patrick Pedrioli, Institute for Systems Biology
Jimmy Eng, Institute for Systems Biology
Michael MacCoss, University of Washington
John Cottrell, Matrix Science Ltd.
John Chakel, Agilent Technologies, Inc.
Marvin Vestal, ABI
David Fenyo, GE Healthcare
Webcast Video
SESSION 2
ANALYSIS AND VALIDATION OF PROTEOMIC DATA GENERATED BY PLATFOMS OTHER THAN LC-MS/MS

Chair Ruedi Aebersold
1:30 Garry Nolan, Stanford University
Single Cell Proteomics: 25 Years of Standards in flow Cytometry
Webcast Video
2:05 Gordon Anderson, Pacific Northwest Laboratories
Proteomic analysis using accurate mass tags
Webcast Video
2:40 Christopher Hogue, University of Toronto
Protein-Protein Interaction
Webcast Video
3:15 Michael Snyder, Yale University
Protein arrays
Webcast Video
4:05 Philip Andrews, University of Michigan
2DE coupled to mass spectrometry
Webcast Video
4:40 Discussion 2
Discussants:
Samir Hanash, Fred Hutchinson Cancer Research Center
Gilbert Omenn, University of Michigan
Timothy Veenstra, National Cancer Institute
John Garavelli, EBI
Lance Liotta, National Cancer Institute
Jeffrey Smith, The Burnham Institute
Webcast Video
SESSION 3
PROBLEMS FACED BY THE PROTEOMICS COMMUNITY IN PUBLICATION, DISSEMINATION, AND INTEGRATION OF PROTEOMIC DATA

Chair Rolf Apweiler
5:30 Catherine Ball, Stanford University
Presentation of MIAME: lessons from the microarray community
Webcast Video
JANUARY 5, 2005
Entire Webcast Video of Day Two
8:30 Rolf Apweiler, EBI
Protein databases
Webcast Video
9:05 Steven Carr, The Broad Institute
Journal publication of proteomics data
Webcast Video
9:40 Henning Hermjakob, EBI
Use of Standards in Proteomic Databases
Webcast Video
10:30 Steve Bryant, The National Center for Biotechnology Information
NCBI Resources for Proteomics Data Integration
Webcast Video
11:05 Discussion 3
Discussant:
Norman Paton, University of Manchester
Lewis Geer, NLM
Amos Bairoch, Swiss Institute of Bioinformatics
Catherine Fenselau, University of Maryland
Andrew Marshall, Nature Biotechnology
Katie Cottingham, Analytical Chemistry & Journal of Proteome Research
Valda Vinson, Science
Webcast Video
12:05 Ruedi Aebersold and Rolf Apweiler
Concluding remarks
Webcast Video
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