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Knockout Mouse Phenotyping (52)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes.Oellrich, Anika; Collier, Nigel; Smedley, Damian; Groza, TudorPloS one.2015;e011604025607983
Automatic concept recognition using the human phenotype ontology reference and test suite corpora.Groza, Tudor; Köhler, Sebastian; Doelken, Sandra; Collier, Nigel; Oellrich, Anika; Smedley, Damian; Couto, Francisco M; Baynam, Gareth; Zankl, Andreas; Robinson, Peter NDatabase : the journal of biological databases and curation.2015;25725061
Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening.Gurumurthy, Channabasavaiah B; Joshi, Poonam S; Kurz, Scott G; Ohtsuka, Masato; Quadros, Rolen M; Harms, Donald W; Lloyd, K C KentInternational journal of genomics.2015;25815306
Linking gene expression to phenotypes via pathway information.Papatheodorou, Irene; Oellrich, Anika; Smedley, DamianJournal of biomedical semantics.2015;25901272
Optical coherence tomography guided microinjections in live mouse embryos: high-resolution targeted manipulation for mouse embryonic research.Syed, Saba H; Coughlin, Andrew J; Garcia, Monica D; Wang, Shang; West, Jennifer L; Larin, Kirill V; Larina, Irina VJournal of biomedical optics.2015 May;25581495
Applying the ARRIVE Guidelines to an In Vivo Database.Karp, Natasha A; Meehan, Terry F; Morgan, Hugh; Mason, Jeremy C; Blake, Andrew; Kurbatova, Natalja; Smedley, Damian; Jacobsen, Julius; Mott, Richard F; Iyer, Vivek; Matthews, Peter; Melvin, David G; Wells, Sara; Flenniken, Ann M; Masuya, Hiroshi; Wakana, Shigeharu; White, Jacqueline K; Lloyd, K C Kent; Reynolds, Corey L; Paylor, Richard; West, David B; Svenson, Karen L; Chesler, Elissa J; de Angelis, Martin Hrab?; Tocchini-Valentini, Glauco P; Sorg, Tania; Herault, Yann; Parkinson, Helen; Mallon, Ann-Marie; Brown, Steve D MPLoS biology.2015 May;e100215125992600
Quantitative methods for reconstructing tissue biomechanical properties in optical coherence elastography: a comparison study.Han, Zhaolong; Li, Jiasong; Singh, Manmohan; Wu, Chen; Liu, Chih-hao; Wang, Shang; Idugboe, Rita; Raghunathan, Raksha; Sudheendran, Narendran; Aglyamov, Salavat R; Twa, Michael D; Larin, Kirill VPhysics in medicine and biology.2015 May 7;3531-4725860076
Actin cytoskeletal remodeling with protrusion formation is essential for heart regeneration in Hippo-deficient mice.Morikawa, Yuka; Zhang, Min; Heallen, Todd; Leach, John; Tao, Ge; Xiao, Yang; Bai, Yan; Li, Wei; Willerson, James T; Martin, James FScience signaling.2015 May 5;ra4125943351
Reproducibility: use mouse biobanks or lose them.Lloyd, Kent; Franklin, Craig; Lutz, Cat; Magnuson, TerryNature.2015 Jun 11;151-326062496
Phase-sensitive optical coherence elastography at 1.5 million A-Lines per second.Singh, Manmohan; Wu, Chen; Liu, Chih-Hao; Li, Jiasong; Schill, Alexander; Nair, Achuth; Larin, Kirill VOptics letters.2015 Jun 1;2588-9126030564
Rescue of germline transmission from chimeras by IVF after sperm analysis.Li, Ming-Wen; Willis, Brandon J; Evans, Kristin D; Araiza, Renee S; Lee, Angus Yiu-Fai; Lloyd, K C KentTransgenic research.2015 Feb;99-10825080098
Optical coherence elastography for tissue characterization: a review.Wang, Shang; Larin, Kirill VJournal of biophotonics.2015 Apr;279-30225412100
A lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines.West, David B; Pasumarthi, Ravi K; Baridon, Brian; Djan, Esi; Trainor, Amanda; Griffey, Stephen M; Engelhard, Eric K; Rapp, Jared; Li, Bowen; de Jong, Pieter J; Lloyd, K C KentGenome research.2015 Apr;598-60725591789
Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice.Lee, Angus Yiu-Fai; Lloyd, Kevin C KentFEBS open bio.2014;637-4225161872
Impact of temporal variation on design and analysis of mouse knockout phenotyping studies.Karp, Natasha A; Speak, Anneliese O; White, Jacqueline K; Adams, David J; Hrabe de Angelis, Martin; Herault, Yann; Mott, Richard FPloS one.2014;e11123925343444
A common control group - optimising the experiment design to maximise sensitivity.Bate, Simon; Karp, Natasha APloS one.2014;e11487225504147
Right Ventricular Epicardial Fibrosis in Mice With Sternal Segment Dislocation.Adissu, H A; Medhanie, G A; Morikawa, L; White, J K; Newbigging, S; McKerlie, CVeterinary pathology.2014 Oct 3;25281652
Differentiating untreated and cross-linked porcine corneas of the same measured stiffness with optical coherence elastography.Li, Jiasong; Han, Zhaolong; Singh, Manmohan; Twa, Michael D; Larin, Kirill VJournal of biomedical optics.2014 Nov;25408955
Disruption of the potassium channel regulatory subunit KCNE2 causes iron-deficient anemia.Salsbury, Grace; Cambridge, Emma L; McIntyre, Zoe; Arends, Mark J; Karp, Natasha A; Isherwood, Christopher; Shannon, Carl; Hooks, Yvette; Sanger Mouse Genetics Project; Ramirez-Solis, Ramiro; Adams, David J; White, Jacqueline K; Speak, Anneliese OExperimental hematology.2014 Dec;1053-8.e125127743
Using association rule mining to determine promising secondary phenotyping hypotheses.Oellrich, Anika; Jacobsen, Julius; Papatheodorou, Irene; Sanger Mouse Genetics Project; Smedley, DamianBioinformatics (Oxford, England)2014 Jun 15i52-5924932005
Automated pipeline for anatomical phenotyping of mouse embryos using micro-CT.Wong, Michael D; Maezawa, Yoshiro; Lerch, Jason P; Henkelman, R MarkDevelopment (Cambridge, England)2014 Jun2533-4124850858
Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen.Adissu, Hibret A; Estabel, Jeanne; Sunter, David; Tuck, Elizabeth; Hooks, Yvette; Carragher, Damian M; Clarke, Kay; Karp, Natasha A; Sanger Mouse Genetics Project; Newbigging, Susan; Jones, Nora; Morikawa, Lily; White, Jacqueline K; McKerlie, ColinDisease models & mechanisms2014 May515-2424652767
IVF recovery of mutant mouse lines using sperm cryopreserved with mtg in cryovials.Li, Ming-Wen; Vallelunga, Jadine M; Kinchen, Kristy L; Rink, Karina L; Zarrabi, Jasmin; Shamamian, Armen O; Lloyd, K C KentCryo letters2014 Mar-Apr145-5324869647
Rapid conversion of EUCOMM/KOMP-CSD alleles in mouse embryos using a cell-permeable Cre recombinase.Ryder, Edward; Doe, Brendan; Gleeson, Diane; Houghton, Richard; Dalvi, Priya; Grau, Evelyn; Habib, Bishoy; Miklejewska, Evelina; Newman, Stuart; Sethi, Debarati; Sinclair, Caroline; Vyas, Sapna; Wardle-Jones, Hannah; Sanger Mouse Genetics Project; BottomlTransgenic research2014 Feb177-8524197666
Investigations of motility and fertilization potential in thawed cryopreserved mouse sperm from cold-stored epididymides.Takeo, Toru; Fukumoto, Kiyoko; Kondo, Tomoko; Haruguchi, Yukie; Takeshita, Yumi; Nakamuta, Yuko; Tsuchiyama, Shuuji; Yoshimoto, Hidetaka; Shimizu, Norihiko; Li, Ming-Wen; Kinchen, Kristy; Vallelunga, Jadine; Lloyd, K C Kent; Nakagata, NaomiCryobiology2014 Feb7-Dec24201107
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.Koscielny, Gautier; Yaikhom, Gagarine; Iyer, Vivek; Meehan, Terrence F; Morgan, Hugh; Atienza-Herrero, Julian; Blake, Andrew; Chen, Chao-Kung; Easty, Richard; Di Fenza, Armida; Fiegel, Tanja; Grifiths, Mark; Horne, Alan; Karp, Natasha A; Kurbatova, NataljNucleic acids research2014 JanD802-924194600
Special section guest editorial: Optical coherence tomography and interferometry: advanced engineering and biomedical applications.Larin, Kirill V; Tuchin, Valery V; Vitkin, AlexJournal of biomedical optics20142110124570205
Linking tissues to phenotypes using gene expression profiles.Oellrich, Anika; Sanger Mouse Genetics Project; Smedley, DamianDatabase : the journal of biological databases and curation2014bau01724634472
A mouse model for inducible overexpression of Prdm14 results in rapid-onset and highly penetrant T-cell acute lymphoblastic leukemia (T-ALL).Carofino, Brandi L; Ayanga, Bernard; Justice, Monica JDisease models & mechanisms2013 Nov1494-50624046360
Sestrin-2, a repressor of PDGFR* signalling, promotes cigarette-smoke-induced pulmonary emphysema in mice and is upregulated in individuals with COPD.Heidler, Juliana; Fysikopoulos, Athanasios; Wempe, Frank; Seimetz, Michael; Bangsow, Thorsten; Tomasovic, Ana; Veit, Florian; Scheibe, Susan; Pichl, Alexandra; Weisel, Friederike; Lloyd, K C Kent; Jaksch, Peter; Klepetko, Walter; Weissmann, Norbert; von MDisease models & mechanisms2013 Nov1378-8724046361
Effect of different cryoprotectant agents on spermatogenesis efficiency in cryopreserved and grafted neonatal mouse testicular tissue.Yildiz, Cengiz; Mullen, Brendan; Jarvi, Keith; McKerlie, Colin; Lo, Kirk CCryobiology2013 Aug70-523721968
Combining sperm plug genotyping and coat color chimerism predicts germline transmission.Lee, Angus Yiu-Fai; Evans, Kristin; Willis, Brandon; Lloyd, K C KentTransgenic research2013 Jul 17NULL23860911
Bloomsbury report on mouse embryo phenotyping: recommendations from the IMPC workshop on embryonic lethal screening.Adams, David; Baldock, Richard; Bhattacharya, Shoumo; Copp, Andrew J; Dickinson, Mary; Greene, Nicholas D E; Henkelman, Mark; Justice, Monica; Mohun, Timothy; Murray, Stephen A; Pauws, Erwin; Raess, Michael; Rossant, Janet; Weaver, Tom; West, DavidDisease models & mechanisms2013 Jul-Aug104923828646
Bloomsbury report on mouse embryo phenotyping: recommendations from the IMPC workshop on embryonic lethal screening.Adams, David; Baldock, Richard; Bhattacharya, Shoumo; Copp, Andrew J; Dickinson, Mary; Greene, Nicholas D E; Henkelman, Mark; Justice, Monica; Mohun, Timothy; Murray, Stephen A; Pauws, Erwin; Raess, Michael; Rossant, Janet; Weaver, Tom; West, DavidDisease models & mechanisms2013 May571-923519032
Zic3 is required in the extra-cardiac perinodal region of the lateral plate mesoderm for left-right patterning and heart development.Jiang, Zhengxin; Zhu, Lirong; Hu, Lingyun; Slesnick, Timothy C; Pautler, Robia G; Justice, Monica J; Belmont, John WHuman molecular genetics2013 Mar 1879-8923184148
Safety, efficacy and efficiency of laser-assisted IVF in subfertile mutant mouse strains.Li, Ming-Wen; Kinchen, Kristy L; Vallelunga, Jadine M; Young, Diana L; Wright, Kaleb D K; Gorano, Lisa N; Wasson, Katherine; Lloyd, K C KentReproduction (Cambridge, England)2013 Mar245-5423315689
The mouse pathology ontology, MPATH; structure and applications.Schofield, Paul N; Sundberg, John P; Sundberg, Beth A; McKerlie, Colin; Gkoutos, Georgios VJournal of biomedical semantics20131824033988
Preclinical research in Rett syndrome: setting the foundation for translational success.Katz, David M; Berger-Sweeney, Joanne E; Eubanks, James H; Justice, Monica J; Neul, Jeffrey L; Pozzo-Miller, Lucas; Blue, Mary E; Christian, Diana; Crawley, Jacqueline N; Giustetto, Maurizio; Guy, Jacky; Howell, C James; Kron, Miriam; Nelson, Sacha B; Samaco, Rodney C; Schaevitz, Laura R; St Hillaire-Clarke, Coryse; Young, Juan L; Zoghbi, Huda Y; Mamounas, Laura ADisease models & mechanisms2012 Nov733-4523115203
Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans.Mallon AM, Iyer V, Melvin D, Morgan H, Parkinson H, Brown SD, Flicek P, Skarnes WC.Mamm Genome2012 Oct641-5222991088
The mammalian gene function resource: the international knockout mouse consortium.Bradley A, Anastassiadis K, Ayadi A, Battey JF, Bell C, Birling MC, Bottomley J, Brown SD, Bürger A, Bult CJ, Bushell W, Collins FS, Desaintes C, Doe B, Economides A, Eppig JT, Finnell RH, Fletcher C, Fray M, Frendewey D, Friedel RH, Grosveld FG, et al.Mamm Genome2012 Oct580-622968824
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data.Smith CL, Eppig JT.Mamm Genome2012 Oct653-6822961259
The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping.Brown SD, Moore MW.Mamm Genome2012 Oct632-4022940749
Beyond knockouts: cre resources for conditional mutagenesis.Murray SA, Eppig JT, Smedley D, Simpson EM, Rosenthal N.Mamm Genome2012 Oct587-9922926223
Centralized mouse repositories.Donahue, Leah Rae; Hrabe de Angelis, Martin; Hagn, Michael; Franklin, Craig; Lloyd, K C Kent; Magnuson, Terry; McKerlie, Colin; Nakagata, Naomi; Obata, Yuichi; Read, Stuart; Wurst, Wolfgang; Horlein, Andreas; Davisson, Muriel TMammalian genome : official journal of the International Mammalian Genome Society2012 Oct559-7122945696
Genetically Engineered Mice by Pronuclear DNA microinjection.Demayo, Janet L; Wang, Jie; Liang, Dongcai; Zhang, Ruina; Demayo, Francesco JCurrent protocols in mouse biology2012 Sep 1245-26223024927
Sphingosine-1-phosphate lyase expression in embryonic and adult murine tissues.Borowsky, Alexander D; Bandhuvula, Padmavathi; Kumar, Ashok; Yoshinaga, Yuko; Nefedov, Mikhail; Fong, Loren G; Zhang, Meng; Baridon, Brian; Dillard, Lisa; de Jong, Pieter; Young, Stephen G; West, David B; Saba, Julie DJournal of lipid research2012 Sep1920-3122781001
Structural and functional concepts in current mouse phenotyping and archiving facilities.Kollmus, Heike; Post, Rainer; Brielmeier, Markus; Fernandez, Julia; Fuchs, Helmut; McKerlie, Colin; Montoliu, Lluis; Otaegui, Pedro J; Rebelo, Manuel; Riedesel, Hermann; Ruberte, Jesus; Sedlacek, Radislav; de Angelis, Martin Hrabe; Schughart, KlausJournal of the American Association for Laboratory Animal Science : JAALAS2012 Jul418-3523043807
The role of sphingosine-1-phosphate transporter Spns2 in immune system function.Nijnik A, Clare S, Hale C, Chen J, Raisen C, Mottram L, Lucas M, Estabel J, Ryder E, Adissu H; Sanger Mouse Genetics Project, Adams NC, Ramirez-Solis R, White JK, Steel KP, Dougan G, Hancock RE.J Immunol2012 Jul 1102-1122664872
Accessing and mining data from large-scale mouse phenotyping projects.Morgan, Hugh; Simon, Michelle; Mallon, Ann-MarieInternational review of neurobiology201247-7023195311
Robust and sensitive analysis of mouse knockout phenotypes.Karp, Natasha A; Melvin, David; Sanger Mouse Genetics Project; Mott, Richard FPloS one2012e5241023300663
A knockout mouse resource for the biomedical research community.Lloyd KC.Ann N Y Acad Sci2011 Dec24-622211970
Optical Coherence Tomography for live imaging of mammalian development.Larina IV, Larin KV, Justice MJ, Dickinson ME.Curr Opin Genet Dev2011 Oct579-8421962442

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