We Accelerate Discovery

You are here

NIH Director's Pioneer Award Program (1306)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
Nonlinear light-sheet fluorescence microscopy by photobleaching imprinting.Gao, Liang; Zhu, Liren; Li, Chiye; Wang, Lihong VJournal of the Royal Society, Interface / the Royal Society2014 Apr 62013085124478278
Incorporation of flexible objectives and time-linked simulation with flux balance analysis.Birch, Elsa W; Udell, Madeleine; Covert, Markus WJournal of theoretical biology2014 Mar 2121-Dec24361328
The transcription factor titration effect dictates level of gene expression.Brewster, Robert C; Weinert, Franz M; Garcia, Hernan G; Song, Dan; Rydenfelt, Mattias; Phillips, RobCell2014 Mar 131312-2324612990
Long term stability of nanowire nanoelectronics in physiological environments.Zhou, Wei; Dai, Xiaochuan; Fu, Tian-Ming; Xie, Chong; Liu, Jia; Lieber, Charles MNano letters2014 Mar 121614-924479700
Ferromagnetic nanoparticles with peroxidase-like activity enhance the cleavage of biological macromolecules for biofilm elimination.Gao, Lizeng; Giglio, Krista M; Nelson, Jacquelyn L; Sondermann, Holger; Travis, Alexander JNanoscale2014 Mar 72588-9324468900
Medicine. Combating evolution to fight disease.Rosenberg, Susan M; Queitsch, ChristineScience (New York, N.Y.)2014 Mar 71088-924604189
Common genetic variants modulate pathogen-sensing responses in human dendritic cells.Lee, Mark N; Ye, Chun; Villani, Alexandra-Chloe; Raj, Towfique; Li, Weibo; Eisenhaure, Thomas M; Imboywa, Selina H; Chipendo, Portia I; Ran, F Ann; Slowikowski, Kamil; Ward, Lucas D; Raddassi, Khadir; McCabe, Cristin; Lee, Michelle H; Frohlich, Irene Y; HScience (New York, N.Y.)2014 Mar 7124698024604203
Cortical activity in the null space: permitting preparation without movement.Kaufman, Matthew T; Churchland, Mark M; Ryu, Stephen I; Shenoy, Krishna VNature neuroscience2014 Mar440-824487233
Lis1 regulates asymmetric division in hematopoietic stem cells and in leukemia.Zimdahl, Bryan; Ito, Takahiro; Blevins, Allen; Bajaj, Jeevisha; Konuma, Takaaki; Weeks, Joi; Koechlein, Claire S; Kwon, Hyog Young; Arami, Omead; Rizzieri, David; Broome, H Elizabeth; Chuah, Charles; Oehler, Vivian G; Sasik, Roman; Hardiman, Gary; Reya, TNature genetics2014 Mar245-5224487275
CMV Infection, TLR-2 and -4 Expression, and Cytokine Profiles in Early-Onset Preeclampsia with HELLP Syndrome.Xie, Fang; von Dadelszen, Peter; Nadeau, JosephAmerican journal of reproductive immunology (New York, N.Y. : 1989)2014 Feb 24NULL24612145
Intranasal epidermal growth factor treatment rescues neonatal brain injury.Scafidi, Joseph; Hammond, Timothy R; Scafidi, Susanna; Ritter, Jonathan; Jablonska, Beata; Roncal, Maria; Szigeti-Buck, Klara; Coman, Daniel; Huang, Yuegao; McCarter Jr, Robert J; Hyder, Fahmeed; Horvath, Tamas L; Gallo, VittorioNature2014 Feb 13230-424390343
Lipid Modulation of Calcium Flux through CaV2.3 Regulates Acrosome Exocytosis and Fertilization.Cohen, Roy; Buttke, Danielle E; Asano, Atsushi; Mukai, Chinatsu; Nelson, Jacquelyn L; Ren, Dongjun; Miller, Richard J; Cohen-Kutner, Moshe; Atlas, Daphne; Travis, Alexander JDevelopmental cell2014 Feb 10310-2124525187
Cultural Relativity in Perceiving Emotion From Vocalizations.Gendron, Maria; Roberson, Debi; van der Vyver, Jacoba Marieta; Barrett, Lisa FeldmanPsychological science2014 Feb 5NULL24501109
Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.Spaethling, Jennifer M; Piel, David; Dueck, Hannah; Buckley, Peter T; Morris, Jacqueline F; Fisher, Stephen A; Lee, Jaehee; Sul, Jai-Yoon; Kim, Junhyong; Bartfai, Tamas; Beck, Sheryl G; Eberwine, James HFASEB journal : official publication of the Federation of American Societies for Experimental Biology2014 Feb771-8024192459
Likelihood methods for point processes with refractoriness.Citi, Luca; Ba, Demba; Brown, Emery N; Barbieri, RiccardoNeural computation2014 Feb237-6324206384
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Lovatt, Ditte; Ruble, Brittani K; Lee, Jaehee; Dueck, Hannah; Kim, Tae Kyung; Fisher, Stephen; Francis, Chantal; Spaethling, Jennifer M; Wolf, John A; Grady, M Sean; Ulyanova, Alexandra V; Yeldell, Sean B; Griepenburg, Julianne C; Buckley, Peter T; Kim, JNature methods2014 Feb190-624412976
Metabolite Profiling of 5'-AMP-Induced Hypometabolism.Zhao, Zhaoyang; Van Oort, Anita; Tao, Zhenyin; O'Brien 3rd, William G; Lee, Cheng ChiMetabolomics : Official journal of the Metabolomic Society2014 Feb 163-7624511307
Intention estimation in brain-machine interfaces.Fan, Joline M; Nuyujukian, Paul; Kao, Jonathan C; Chestek, Cynthia A; Ryu, Stephen I; Shenoy, Krishna VJournal of neural engineering2014 Feb1600424654266
Males shorten the life span of C. elegans hermaphrodites via secreted compounds.Maures, Travis J; Booth, Lauren N; Benayoun, Berenice A; Izrayelit, Yevgeniy; Schroeder, Frank C; Brunet, AnneScience (New York, N.Y.)2014 Jan 31541-424292626
Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.Fu, Yanfang; Sander, Jeffry D; Reyon, Deepak; Cascio, Vincent M; Joung, J KeithNature biotechnology2014 Jan 26NULL24463574
Neural Dynamics of Reaching following Incorrect or Absent Motor Preparation.Ames, K Cora; Ryu, Stephen I; Shenoy, Krishna VNeuron2014 Jan 22438-5124462104
FuseFISH: robust detection of transcribed gene fusions in single cells.Semrau, Stefan; Crosetto, Nicola; Bienko, Magda; Boni, Marina; Bernasconi, Paolo; Chiarle, Roberto; van Oudenaarden, AlexanderCell reports2014 Jan 1618-2324373969
PIWI proteins and PIWI-interacting RNAs in the soma.Ross, Robert J; Weiner, Molly M; Lin, HaifanNature2014 Jan 16353-924429634
Inconvenient truths in the pursuit of scientific knowledge and public health.Relman, David AThe Journal of infectious diseases2014 Jan 15170-224106297
PIWI proteins are essential for early Drosophila embryogenesis.Mani, Sneha Ramesh; Megosh, Heather; Lin, HaifanDevelopmental biology2014 Jan 15340-924184635
Fabrication of Cell Patches Using Biodegradable Scaffolds with a Hexagonal Array of Interconnected Pores (SHAIPs).Zhang, Yu Shrike; Yao, Junjie; Wang, Lihong V; Xia, YounanPolymer2014 Jan 14445-45224443593
Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.Hingorani, Karan S; Gierasch, Lila MCurrent opinion in structural biology2014 Jan 1381-9024434632
Using well-defined Ag nanocubes as substrates to quantify the spatial resolution and penetration depth of surface-enhanced Raman scattering imaging.Moran, Christine H; Rycenga, Matthew; Xia, Xiaohu; Cobley, Claire M; Xia, YounanNanotechnology2014 Jan 101400724334508
Photoimprint photoacoustic microscopy for three-dimensional label-free subdiffraction imaging.Yao, Junjie; Wang, Lidai; Li, Chiye; Zhang, Chi; Wang, Lihong VPhysical review letters2014 Jan 101430224483902
Mycobacteria manipulate macrophage recruitment through coordinated use of membrane lipids.Cambier, C J; Takaki, Kevin K; Larson, Ryan P; Hernandez, Rafael E; Tobin, David M; Urdahl, Kevin B; Cosma, Christine L; Ramakrishnan, LalitaNature2014 Jan 9218-2224336213
The impact of heterogeneous transmission on the establishment and spread of antimalarial drug resistance.Klein, Eili YJournal of theoretical biology2014 Jan 7177-8524076451
Is there consistency and specificity of autonomic changes during emotional episodes? Guidance from the Conceptual Act Theory and psychophysiology.Quigley, Karen S; Barrett, Lisa FeldmanBiological psychology2014 Jan 2NULL24388802
Expanding the scope of site-specific recombinases for genetic and metabolic engineering.Gaj, Thomas; Sirk, Shannon J; Barbas 3rd, Carlos FBiotechnology and bioengineering2014 Jan4165423982993
Cross-reactive immune responses as primary drivers of malaria chronicity.Klein, Eili Y; Graham, Andrea L; Llinas, Manuel; Levin, SimonInfection and immunity2014 Jan140-5124126530
Chromatin immunoprecipitation assay of Piwi in Drosophila.Yin, Hang; Lin, HaifanMethods in molecular biology (Clifton, N.J.)20144165024178552
PhosphoNetworks: a database for human phosphorylation networks.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Zhang, Jin; Zhu, Heng; Qian, JiangBioinformatics (Oxford, England)2014 Jan 1141-224227675
Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.Ngo, Huu B; Lovely, Geoffrey A; Phillips, Rob; Chan, David CNature communications2014307724435062
Chronic Spinal Cord Electrical Stimulation Protects Against 6-hydroxydopamine Lesions.Yadav, Amol P; Fuentes, Romulo; Zhang, Hao; Vinholo, Thais; Wang, Chi-Han; Freire, Marco Aurelio M; Nicolelis, Miguel A LScientific reports2014383924452435
Cell-penetrating peptide-mediated delivery of TALEN proteins via bioconjugation for genome engineering.Liu, Jia; Gaj, Thomas; Patterson, James T; Sirk, Shannon J; Barbas 3rd, Carlos FPloS one2014e8575524465685
Ultrasonically encoded wavefront shaping for focusing into random media.Tay, Jian Wei; Lai, Puxiang; Suzuki, Yuta; Wang, Lihong VScientific reports2014391824472822
Multicontrast photoacoustic in vivo imaging using near-infrared fluorescent proteins.Krumholz, Arie; Shcherbakova, Daria M; Xia, Jun; Wang, Lihong V; Verkhusha, Vladislav VScientific reports2014393924487319
Identification of germline transcriptional regulatory elements in Aedes aegypti.Akbari, Omar S; Papathanos, Philippos A; Sandler, Jeremy E; Kennedy, Katie; Hay, Bruce AScientific reports2014395424492376
Identification of cinnabarinic acid as a novel endogenous aryl hydrocarbon receptor ligand that drives IL-22 production.Lowe, Margaret M; Mold, Jeff E; Kanwar, Bittoo; Huang, Yong; Louie, Alexander; Pollastri, Michael P; Wang, Cuihua; Patel, Gautam; Franks, Diana G; Schlezinger, Jennifer; Sherr, David H; Silverstone, Allen E; Hahn, Mark E; McCune, Joseph MPloS one2014e8787724498387
Visualizing Genomes with Oligopaint FISH Probes.Beliveau, Brian J; Apostolopoulos, Nicholas; Wu, Chao-TingCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]201414.23.1-14.23.2024510436
Dissecting genomic diversity, one cell at a time.Blainey, Paul C; Quake, Stephen RNature methods2014 Jan19-2124524132
Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration.Rydenfelt, Mattias; Cox, Robert Sidney; Garcia, Hernan; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2014 Jan1270224580252
Themis sets the signal threshold for positive and negative selection in T-cell development.Fu, Guo; Casas, Javier; Rigaud, Stephanie; Rybakin, Vasily; Lambolez, Florence; Brzostek, Joanna; Hoerter, John A H; Paster, Wolfgang; Acuto, Oreste; Cheroutre, Hilde; Sauer, Karsten; Gascoigne, Nicholas R JNature2013 Dec 19441-524226767
Absolute photoacoustic thermometry in deep tissue.Yao, Junjie; Ke, Haixin; Tai, Stephen; Zhou, Yong; Wang, Lihong VOptics letters2013 Dec 155228-3124322224
Wide-field two-dimensional multifocal optical-resolution photoacoustic-computed microscopy.Xia, Jun; Li, Guo; Wang, Lidai; Nasiriavanaki, Mohammadreza; Maslov, Konstantin; Engelbach, John A; Garbow, Joel R; Wang, Lihong VOptics letters2013 Dec 155236-924322226
Free-standing kinked nanowire transistor probes for targeted intracellular recording in three dimensions.Qing, Quan; Jiang, Zhe; Xu, Lin; Gao, Ruixuan; Mai, Liqiang; Lieber, Charles MNature nanotechnology2013 Dec 15NULL24336402
Nasal Microenvironments and Interspecific Interactions Influence Nasal Microbiota Complexity and S.ýýaureus Carriage.Yan, Miling; Pamp, Sunje J; Fukuyama, Julia; Hwang, Peter H; Cho, Do-Yeon; Holmes, Susan; Relman, David ACell host & microbe2013 Dec 11631-4024331461
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.Schwartz, Schraga; Agarwala, Sudeep D; Mumbach, Maxwell R; Jovanovic, Marko; Mertins, Philipp; Shishkin, Alexander; Tabach, Yuval; Mikkelsen, Tarjei S; Satija, Rahul; Ruvkun, Gary; Carr, Steven A; Lander, Eric S; Fink, Gerald R; Regev, AvivCell2013 Dec 51409-2124269006
Adipose Tissue Macrophages: Amicus adipem?Odegaard, Justin I; Ganeshan, Kirthana; Chawla, AjayCell metabolism2013 Dec 3767-824315364
Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.Maeder, Morgan L; Angstman, James F; Richardson, Marcy E; Linder, Samantha J; Cascio, Vincent M; Tsai, Shengdar Q; Ho, Quan H; Sander, Jeffry D; Reyon, Deepak; Bernstein, Bradley E; Costello, Joseph F; Wilkinson, Miles F; Joung, J KeithNature biotechnology2013 Dec1137-4224108092
Accelerated discovery via a whole-cell model.Sanghvi, Jayodita C; Regot, Sergi; Carrasco, Silvia; Karr, Jonathan R; Gutschow, Miriam V; Bolival Jr, Benjamin; Covert, Markus WNature methods2013 Dec1192-524185838
DataHigh: graphical user interface for visualizing and interacting with high-dimensional neural activity.Cowley, Benjamin R; Kaufman, Matthew T; Butler, Zachary S; Churchland, Mark M; Ryu, Stephen I; Shenoy, Krishna V; Yu, Byron MJournal of neural engineering2013 Dec6601224216250
DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation.Boedicker, James Q; Garcia, Hernan G; Johnson, Stephanie; Phillips, RobPhysical biology2013 Dec6600524231252
Discovery of a potent inhibitor of replication protein a protein-protein interactions using a fragment-linking approach.Frank, Andreas O; Feldkamp, Michael D; Kennedy, J Phillip; Waterson, Alex G; Pelz, Nicholas F; Patrone, James D; Vangamudi, Bhavatarini; Camper, DeMarco V; Rossanese, Olivia W; Chazin, Walter J; Fesik, Stephen WJournal of medicinal chemistry2013 Nov 279242-5024147804
25th anniversary article: galvanic replacement: a simple and versatile route to hollow nanostructures with tunable and well-controlled properties.Xia, Xiaohu; Wang, Yi; Ruditskiy, Aleksey; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2013 Nov 266313-3324027074
Rapid, stable, chemoselective labeling of thiols with Julia-Kocienski-like reagents: a serum-stable alternative to maleimide-based protein conjugation.Toda, Narihiro; Asano, Shigehiro; Barbas 3rd, Carlos FAngewandte Chemie (International ed. in English)2013 Nov 2512592-624123851
Delicate Balance between Functionally Required Flexibility and Aggregation Risk in a *-Rich Protein.Ferrolino, Mylene C; Zhuravleva, Anastasia; Budyak, Ivan L; Krishnan, Beena; Gierasch, Lila MBiochemistry2013 Nov 25NULL24236614
Antigen-specific B-cell receptor sensitizes B cells to infection by influenza virus.Dougan, Stephanie K; Ashour, Joseph; Karssemeijer, Roos A; Popp, Maximilian W; Avalos, Ana M; Barisa, Marta; Altenburg, Arwen F; Ingram, Jessica R; Cragnolini, Juan Jose; Guo, Chunguang; Alt, Frederick W; Jaenisch, Rudolf; Ploegh, Hidde LNature2013 Nov 21406-924141948
Increased robustness of single-molecule counting with microfluidics, digital isothermal amplification, and a mobile phone versus real-time kinetic measurements.Selck, David A; Karymov, Mikhail A; Sun, Bing; Ismagilov, Rustem FAnalytical chemistry2013 Nov 1911129-3624199852
CD4 CTL: Living up to the challenge.Cheroutre, Hilde; Husain, Mohammad MushtaqSeminars in immunology2013 Nov 15273-8124246226
Ultrasonically encoded photoacoustic flowgraphy in biological tissue.Wang, Lidai; Xia, Jun; Yao, Junjie; Maslov, Konstantin I; Wang, Lihong VPhysical review letters2013 Nov 1520430124289689
SHANK3 and IGF1 restore synaptic deficits in neurons from 22q13 deletion syndrome patients.Shcheglovitov, Aleksandr; Shcheglovitova, Olesya; Yazawa, Masayuki; Portmann, Thomas; Shu, Rui; Sebastiano, Vittorio; Krawisz, Anna; Froehlich, Wendy; Bernstein, Jonathan A; Hallmayer, Joachim F; Dolmetsch, Ricardo ENature2013 Nov 14267-7124132240
A cytochrome P450 serves as an unexpected terpene cyclase during fungal meroterpenoid biosynthesis.Chooi, Yit-Heng; Hong, Young J; Cacho, Ralph A; Tantillo, Dean J; Tang, YiJournal of the American Chemical Society2013 Nov 1316805-824161266
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins.Teytelman, Leonid; Thurtle, Deborah M; Rine, Jasper; van Oudenaarden, AlexanderProceedings of the National Academy of Sciences of the United States of America2013 Nov 1218602-724173036
Blood spotlight on leukocytes and obesity.Carvalheira, Jose Barreto Campello; Qiu, Yifu; Chawla, AjayBlood2013 Nov 73263-724065242
Context-dependent computation by recurrent dynamics in prefrontal cortex.Mante, Valerio; Sussillo, David; Shenoy, Krishna V; Newsome, William TNature2013 Nov 778-8424201281
Feedback control of gene expression variability in the Caenorhabditis elegans Wnt pathway.Ji, Ni; Middelkoop, Teije C; Mentink, Remco A; Betist, Marco C; Tonegawa, Satto; Mooijman, Dylan; Korswagen, Hendrik C; van Oudenaarden, AlexanderCell2013 Nov 7869-8024209624
A brain-machine interface enables bimanual arm movements in monkeys.Ifft, Peter J; Shokur, Solaiman; Li, Zheng; Lebedev, Mikhail A; Nicolelis, Miguel A LScience translational medicine2013 Nov 6210ra15424197735
Imaging neuronal populations in behaving rodents: paradigms for studying neural circuits underlying behavior in the mammalian cortex.Chen, Jerry L; Andermann, Mark L; Keck, Tara; Xu, Ning-Long; Ziv, YanivThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Nov 617631-4024198355
Perfusion Imaging of Focal Cortical Dysplasia Using Arterial Spin Labeling: Correlation With Histopathological Vascular Density.Wintermark, Pia; Lechpammer, Mirna; Warfield, Simon K; Kosaras, Bela; Takeoka, Masanori; Poduri, Annapurna; Madsen, Joseph R; Bergin, Ann M; Whalen, Stephen; Jensen, Frances EJournal of child neurology2013 Nov1474-148223696629
Directed evolution of the TALE N-terminal domain for recognition of all 5' bases.Lamb, Brian M; Mercer, Andrew C; Barbas 3rd, Carlos FNucleic acids research2013 Nov9779-8523980031
AMPA receptor antagonist NBQX attenuates later-life epileptic seizures and autistic-like social deficits following neonatal seizures.Lippman-Bell, Jocelyn J; Rakhade, Sanjay N; Klein, Peter M; Obeid, Makram; Jackson, Michele C; Joseph, Annelise; Jensen, Frances EEpilepsia2013 Nov1922-3224117347
Genome engineering using the CRISPR-Cas9 system.Ran, F Ann; Hsu, Patrick D; Wright, Jason; Agarwala, Vineeta; Scott, David A; Zhang, FengNature protocols2013 Nov2281-30824157548
Cooperation in Harsh Environments and the Emergence of Spatial Patterns.Smaldino, Paul EChaos, solitons, and fractals2013 NovNULL24277977
PIWI proteins are essential for early Drosophila embryogenesis.Mani, Sneha Ramesh; Megosh, Heather; Lin, HaifanDevelopmental biology2013 Oct 31NULL24184635
Complexity generation in fungal polyketide biosynthesis: a spirocycle-forming P450 in the concise pathway to the antifungal drug griseofulvin.Cacho, Ralph A; Chooi, Yit-Heng; Zhou, Hui; Tang, YiACS chemical biology2013 Oct 182322-3023978092
Dendritic Glutamate Receptor mRNAs Show Contingent Local Hotspot-Dependent Translational Dynamics.Kim, Tae Kyung; Sul, Jai-Yoon; Helmfors, Henrik; Langel, Ulo; Kim, Junhyong; Eberwine, JamesCell reports2013 Oct 17114-2524075992
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.Kashyap, Purna C; Marcobal, Angela; Ursell, Luke K; Smits, Samuel A; Sonnenburg, Erica D; Costello, Elizabeth K; Higginbottom, Steven K; Domino, Steven E; Holmes, Susan P; Relman, David A; Knight, Rob; Gordon, Jeffrey I; Sonnenburg, Justin LProceedings of the National Academy of Sciences of the United States of America2013 Oct 1517059-6424062455
Identification of discrete functional subregions of the human periaqueductal gray.Satpute, Ajay B; Wager, Tor D; Cohen-Adad, Julien; Bianciardi, Marta; Choi, Ji-Kyung; Buhle, Jason T; Wald, Lawrence L; Barrett, Lisa FeldmanProceedings of the National Academy of Sciences of the United States of America2013 Oct 1517101-624082116
Higher 5-hydroxymethylcytosine identifies immortal DNA strand chromosomes in asymmetrically self-renewing distributed stem cells.Huh, Yang Hoon; Cohen, Justin; Sherley, James LProceedings of the National Academy of Sciences of the United States of America2013 Oct 1516862-724082118
Non-Invasive and In Situ Characterization of the Degradation of Biomaterial Scaffolds by Volumetric Photoacoustic Microscopy.Zhang, Yu Shrike; Cai, Xin; Yao, Junjie; Xing, Wenxin; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2013 Oct 15NULL24130155
Silver nanocube on gold microplate as a well-defined and highly active substrate for SERS detection.Xia, Xiaohu; Rycenga, Matthew; Qin, Dong; Xia, YounanJournal of materials chemistry. C, Materials for optical and electronic devices2013 Oct 14NULL24187611
Type 2 innate lymphoid cells control eosinophil homeostasis.Nussbaum, Jesse C; Van Dyken, Steven J; von Moltke, Jakob; Cheng, Laurence E; Mohapatra, Alexander; Molofsky, Ari B; Thornton, Emily E; Krummel, Matthew F; Chawla, Ajay; Liang, Hong-Erh; Locksley, Richard MNature2013 Oct 10245-24824037376
Visualization of synaptic inhibition with an optogenetic sensor developed by cell-free protein engineering automation.Grimley, Joshua S; Li, Li; Wang, Weina; Wen, Lei; Beese, Lorena S; Hellinga, Homme W; Augustine, George JThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Oct 916297-30924107961
Chemical analog-to-digital signal conversion based on robust threshold chemistry and its evaluation in the context of microfluidics-based quantitative assays.Huynh, Toan; Sun, Bing; Li, Liang; Nichols, Kevin P; Koyner, Jay L; Ismagilov, Rustem FJournal of the American Chemical Society2013 Oct 214775-8324060606
CRISPR RNA-guided activation of endogenous human genes.Maeder, Morgan L; Linder, Samantha J; Cascio, Vincent M; Fu, Yanfang; Ho, Quan H; Joung, J KeithNature methods2013 Oct977-923892898
Nanoelectronics Meets Biology: From New Nanoscale Devices for Live-Cell Recording to 3D Innervated Tissues.Duan, Xiaojie; Lieber, Charles MChemistry, an Asian journal2013 Oct2304-1423946279
ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.Lin, John Y; Knutsen, Per Magne; Muller, Arnaud; Kleinfeld, David; Tsien, Roger YNature neuroscience2013 Oct1499-50823995068
Burst suppression probability algorithms: state-space methods for tracking EEG burst suppression.Chemali, Jessica; Ching, ShiNung; Purdon, Patrick L; Solt, Ken; Brown, Emery NJournal of neural engineering2013 Oct5601724018288
Calibration-free in vivo transverse blood flowmetry based on cross correlation of slow time profiles from photoacoustic microscopy.Zhou, Yong; Liang, Jinyang; Maslov, Konstantin I; Wang, Lihong VOptics letters2013 Oct 13882-524081077
A brain-machine interface for control of medically-induced coma.Shanechi, Maryam M; Chemali, Jessica J; Liberman, Max; Solt, Ken; Brown, Emery NPLoS computational biology2013 Octe100328424204231
Using a kinase-inducible bimolecular switch to control enzyme activity in living cells.Mehta, Sohum; Zhang, JinCurrent protocols in chemical biology2013 Oct 1227-3724391085
A coaxial optrode as multifunction write-read probe for optogenetic studies in non-human primates.Ozden, Ilker; Wang, Jing; Lu, Yao; May, Travis; Lee, Joonhee; Goo, Werapong; O'Shea, Daniel J; Kalanithi, Paul; Diester, Ilka; Diagne, Mohamed; Deisseroth, Karl; Shenoy, Krishna V; Nurmikko, Arto VJournal of neuroscience methods2013 Sep 30142-5423867081
Real-time segmentation of burst suppression patterns in critical care EEG monitoring.Brandon Westover, M; Shafi, Mouhsin M; Ching, Shinung; Chemali, Jessica J; Purdon, Patrick L; Cash, Sydney S; Brown, Emery NJournal of neuroscience methods2013 Sep 30131-4123891828
Phospholipase B is activated in response to sterol removal and stimulates acrosome exocytosis in murine sperm.Asano, Atsushi; Nelson-Harrington, Jacquelyn L; Travis, Alexander JThe Journal of biological chemistry2013 Sep 2728104-1523943622
Microscale polymer bottles corked with a phase-change material for temperature-controlled release.Hyun, Dong Choon; Lu, Ping; Choi, Sang-Il; Jeong, Unyong; Xia, YounanAngewandte Chemie (International ed. in English)2013 Sep 2710468-7123959631
Circadian gene Bmal1 regulates diurnal oscillations of Ly6C(hi) inflammatory monocytes.Nguyen, Khoa D; Fentress, Sarah J; Qiu, Yifu; Yun, Karen; Cox, Jeffery S; Chawla, AjayScience (New York, N.Y.)2013 Sep 271483-823970558
Mitofusin 2 in POMC Neurons Connects ER Stress with Leptin Resistance and Energy Imbalance.Schneeberger, Marc; Dietrich, Marcelo O; Sebastian, David; Imbernon, Monica; Castano, Carlos; Garcia, Ainhoa; Esteban, Yaiza; Gonzalez-Franquesa, Alba; Rodriguez, Ignacio Castrillon; Bortolozzi, Analia; Garcia-Roves, Pablo M; Gomis, Ramon; Nogueiras, RubeCell2013 Sep 26172-8724074867
Small-animal whole-body photoacoustic tomography: a review.Xia, Jun; Wang, LihongIEEE transactions on bio-medical engineering2013 Sep 25NULL24108456
The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of ýý-Sheets.Budyak, Ivan L; Zhuravleva, Anastasia; Gierasch, Lila MJournal of molecular biology2013 Sep 233522-3523810905
Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein.Feldkamp, Michael D; Frank, Andreas O; Kennedy, J Phillip; Patrone, James D; Vangamudi, Bhavatarini; Waterson, Alex G; Fesik, Stephen W; Chazin, Walter JBiochemistry2013 Sep 176515-2423962067
Developmental Expression of N-Methyl-D-Aspartate (NMDA) Receptor Subunits in Human White and Gray Matter: Potential Mechanism of Increased Vulnerability in the Immature Brain.Jantzie, Lauren L; Talos, Delia M; Jackson, Michele C; Park, Hyun-Kyung; Graham, Dionne A; Lechpammer, Mirna; Folkerth, Rebecca D; Volpe, Joseph J; Jensen, Frances ECerebral cortex (New York, N.Y. : 1991)2013 Sep 17NULL24046081
Dampening of expression oscillations by synchronous regulation of a microRNA and its target.Kim, Dong Hyun; Grun, Dominic; van Oudenaarden, AlexanderNature genetics2013 Sep 15NULL24036951
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.Ran, F Ann; Hsu, Patrick D; Lin, Chie-Yu; Gootenberg, Jonathan S; Konermann, Silvana; Trevino, Alexandro E; Scott, David A; Inoue, Azusa; Matoba, Shogo; Zhang, Yi; Zhang, FengCell2013 Sep 121380-923992846
Expanding the primate body schema in sensorimotor cortex by virtual touches of an avatar.Shokur, Solaiman; O'Doherty, Joseph E; Winans, Jesse A; Bleuler, Hannes; Lebedev, Mikhail A; Nicolelis, Miguel A LProceedings of the National Academy of Sciences of the United States of America2013 Sep 1015121-623980141
Heparan sulfate proteoglycans containing a glypican 5 core and 2-O-sulfo-iduronic acid function as Sonic Hedgehog co-receptors to promote proliferation.Witt, Rochelle M; Hecht, Marie-Lyn; Pazyra-Murphy, Maria F; Cohen, Samuel M; Noti, Christian; van Kuppevelt, Toin H; Fuller, Maria; Chan, Jennifer A; Hopwood, John J; Seeberger, Peter H; Segal, Rosalind AThe Journal of biological chemistry2013 Sep 626275-8823867465
Patterns of nucleotide and haplotype diversity at ICAM-1 across global human populations with varying levels of malaria exposure.Gomez, Felicia; Tomas, Gil; Ko, Wen-Ya; Ranciaro, Alessia; Froment, Alain; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Wambebe, Charles; Hirbo, Jibril B; Rocha, Jorge; Tishkoff, Sarah AHuman genetics2013 Sep987-9923609612
The developmental transcriptome of the mosquito Aedes aegypti, an invasive species and major arbovirus vector.Akbari, Omar S; Antoshechkin, Igor; Amrhein, Henry; Williams, Brian; Diloreto, Race; Sandler, Jeremy; Hay, Bruce AG3 (Bethesda, Md.)2013 Sep1493-50923833213
SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it.Lachance, Joseph; Tishkoff, Sarah ABioEssays : news and reviews in molecular, cellular and developmental biology2013 Sep780-623836388
DNA targeting specificity of RNA-guided Cas9 nucleases.Hsu, Patrick D; Scott, David A; Weinstein, Joshua A; Ran, F Ann; Konermann, Silvana; Agarwala, Vineeta; Li, Yinqing; Fine, Eli J; Wu, Xuebing; Shalem, Ophir; Cradick, Thomas J; Marraffini, Luciano A; Bao, Gang; Zhang, FengNature biotechnology2013 Sep827-3223873081
Local cortical dynamics of burst suppression in the anaesthetized brain.Lewis, Laura D; Ching, Shinung; Weiner, Veronica S; Peterfreund, Robert A; Eskandar, Emad N; Cash, Sydney S; Brown, Emery N; Purdon, Patrick LBrain : a journal of neurology2013 Sep2727-3723887187
Coordination of heart and lung co-development by a multipotent cardiopulmonary progenitor.Peng, Tien; Tian, Ying; Boogerd, Cornelis J; Lu, Min Min; Kadzik, Rachel S; Stewart, Kathleen M; Evans, Sylvia M; Morrisey, Edward ENature2013 Aug 29589-9223873040
Optical control of mammalian endogenous transcription and epigenetic states.Konermann, Silvana; Brigham, Mark D; Trevino, Alexandro E; Hsu, Patrick D; Heidenreich, Matthias; Cong, Le; Platt, Randall J; Scott, David A; Church, George M; Zhang, FengNature2013 Aug 22472-623877069
RNA Replicon Delivery via Lipid-Complexed PRINT Protein Particles.Xu, Jing; Luft, J Christopher; Yi, Xianwen; Tian, Shaomin; Owens, Gary; Wang, Jin; Johnson, Ashley; Berglund, Peter; Smith, Jonathan; Napier, Mary E; Desimone, Joseph MMolecular pharmaceutics2013 Aug 21NULL23924216
Optical-resolution photoacoustic microscopy: auscultation of biological systems at the cellular level.Hu, Song; Wang, Lihong VBiophysical journal2013 Aug 20841-723972836
Spinal projection neurons control turning behaviors in zebrafish.Huang, Kuo-Hua; Ahrens, Misha B; Dunn, Timothy W; Engert, FlorianCurrent biology : CB2013 Aug 191566-7323910662
Enhancement of photoacoustic tomography by ultrasonic computed tomography based on optical excitation of elements of a full-ring transducer array.Xia, Jun; Huang, Chao; Maslov, Konstantin; Anastasio, Mark A; Wang, Lihong VOptics letters2013 Aug 153140-324104670
Salmonella require the fatty acid regulator PPARýý for the establishment of a metabolic environment essential for long-term persistence.Eisele, Nicholas A; Ruby, Thomas; Jacobson, Amanda; Manzanillo, Paolo S; Cox, Jeffery S; Lam, Lilian; Mukundan, Lata; Chawla, Ajay; Monack, Denise MCell host & microbe2013 Aug 14171-8223954156
Allele-specific detection of single mRNA molecules in situ.Hansen, Clinton H; van Oudenaarden, AlexanderNature methods2013 Aug 11NULL23934076
HCN4 dynamically marks the first heart field and conduction system precursors.Liang, Xingqun; Wang, Gang; Lin, Lizhu; Lowe, Jennifer; Zhang, Qingquan; Bu, Lei; Chen, Yihan; Chen, Ju; Sun, Yunfu; Evans, Sylvia MCirculation research2013 Aug 2399-40723743334
Encoding through patterns: regression tree-based neuronal population models.Haslinger, Robert; Pipa, Gordon; Lewis, Laura D; Nikolic, Danko; Williams, Ziv; Brown, EmeryNeural computation2013 Aug1953-9323607564
IL-7 production in murine lymphatic endothelial cells and induction in the setting of peripheral lymphopenia.Miller, Corey N; Hartigan-O'Connor, Dennis J; Lee, Myeong Sup; Laidlaw, Grace; Cornelissen, Ivo P; Matloubian, Mehrdad; Coughlin, Shaun R; McDonald, Donald M; McCune, Joseph MInternational immunology2013 Aug471-8323657000
The roles of monkey M1 neuron classes in movement preparation and execution.Kaufman, Matthew T; Churchland, Mark M; Shenoy, Krishna VJournal of neurophysiology2013 Aug817-2523699057
Untangling the web: the diverse functions of the PIWI/piRNA pathway.Mani, Sneha Ramesh; Juliano, Celina EMolecular reproduction and development2013 Aug632-6423712694
A closed-loop anesthetic delivery system for real-time control of burst suppression.Liberman, Max Y; Ching, Shinung; Chemali, Jessica; Brown, Emery NJournal of neural engineering2013 Aug4600423744607
The aging brain and anesthesia.Brown, Emery N; Purdon, Patrick LCurrent opinion in anaesthesiology2013 Aug414-923820102
TB: the Yin and Yang of lipid mediators.Tobin, David M; Ramakrishnan, LalitaCurrent opinion in pharmacology2013 Aug641-523849093
Random-access optical-resolution photoacoustic microscopy using a digital micromirror device.Liang, Jinyang; Zhou, Yong; Winkler, Amy W; Wang, Lidai; Maslov, Konstantin I; Li, Chiye; Wang, Lihong VOptics letters2013 Aug 12683-623903111
Calibration-free quantification of absolute oxygen saturation based on the dynamics of photoacoustic signals.Xia, Jun; Danielli, Amos; Liu, Yan; Wang, Lidai; Maslov, Konstantin; Wang, Lihong VOptics letters2013 Aug 12800-323903146
Nanometre-scale thermometry in a living cell.Kucsko, G; Maurer, P C; Yao, N Y; Kubo, M; Noh, H J; Lo, P K; Park, H; Lukin, M DNature2013 Aug 154-823903748
Issues related to development of antiepileptogenic therapies.Pitkanen, Asla; Nehlig, Astrid; Brooks-Kayal, Amy R; Dudek, F Edward; Friedman, Daniel; Galanopoulou, Aristea S; Jensen, Frances E; Kaminski, Rafal M; Kapur, Jaideep; Klitgaard, Henrik; Loscher, Wolfgang; Mody, Istvan; Schmidt, DieterEpilepsia2013 Aug35-4323909852
Issues related to symptomatic and disease-modifying treatments affecting cognitive and neuropsychiatric comorbidities of epilepsy.Brooks-Kayal, Amy R; Bath, Kevin G; Berg, Anne T; Galanopoulou, Aristea S; Holmes, Gregory L; Jensen, Frances E; Kanner, Andres M; O'Brien, Terence J; Whittemore, Vicky H; Winawer, Melodie R; Patel, Manisha; Scharfman, Helen EEpilepsia2013 Aug44-6023909853
Epilepsy biomarkers.Engel Jr, Jerome; Pitkanen, Asla; Loeb, Jeffrey A; Dudek, F Edward; Bertram 3rd, Edward H; Cole, Andrew J; Moshe, Solomon L; Wiebe, Samuel; Jensen, Frances E; Mody, Istvan; Nehlig, Astrid; Vezzani, AnnamariaEpilepsia2013 Aug61-923909854
Nanoelectronics-biology frontier: From nanoscopic probes for action potential recording in live cells to three-dimensional cyborg tissues.Duan, Xiaojie; Fu, Tian-Ming; Liu, Jia; Lieber, Charles MNano today2013 Aug 1351-37324073014
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee.Li-Byarlay, Hongmei; Li, Yang; Stroud, Hume; Feng, Suhua; Newman, Thomas C; Kaneda, Megan; Hou, Kirk K; Worley, Kim C; Elsik, Christine G; Wickline, Samuel A; Jacobsen, Steven E; Ma, Jian; Robinson, Gene EProceedings of the National Academy of Sciences of the United States of America2013 Jul 3012750-523852726
Expression of Isl1 during mouse development.Zhuang, Shaowei; Zhang, Qingquan; Zhuang, Tao; Evans, Sylvia M; Liang, Xingqun; Sun, YunfuGene expression patterns : GEP2013 Jul 29407-41223906961
A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model.Chiu, Isaac M; Morimoto, Emiko T A; Goodarzi, Hani; Liao, Jennifer T; O'Keeffe, Sean; Phatnani, Hemali P; Muratet, Michael; Carroll, Michael C; Levy, Shawn; Tavazoie, Saeed; Myers, Richard M; Maniatis, TomCell reports2013 Jul 25385-40123850290
Expanding the structural diversity of polyketides by exploring the cofactor tolerance of an inline methyltransferase domain.Winter, Jaclyn M; Chiou, Grace; Bothwell, Ian R; Xu, Wei; Garg, Neil K; Luo, Minkui; Tang, YiOrganic letters2013 Jul 193774-723837609
Optical clearing-aided photoacoustic microscopy with enhanced resolution and imaging depth.Zhou, Yong; Yao, Junjie; Wang, Lihong VOptics letters2013 Jul 152592-523939121
Discovery of Protein-Protein Interaction Inhibitors of Replication Protein A.Patrone, James D; Kennedy, J Phillip; Frank, Andreas O; Feldkamp, Michael D; Vangamudi, Bhavatarini; Pelz, Nicholas F; Rossanese, Olivia W; Waterson, Alex G; Chazin, Walter J; Fesik, Stephen WACS medicinal chemistry letters2013 Jul 11601-60523914285
Dysbiosis of the gut microbiota is associated with hiv disease progression and tryptophan catabolism.Vujkovic-Cvijin, Ivan; Dunham, Richard M; Iwai, Shoko; Maher, Michael C; Albright, Rebecca G; Broadhurst, Mara J; Hernandez, Ryan D; Lederman, Michael M; Huang, Yong; Somsouk, Ma; Deeks, Steven G; Hunt, Peter W; Lynch, Susan V; McCune, Joseph MScience translational medicine2013 Jul 10193ra9123843452
Modular use of peripheral input channels tunes motion-detecting circuitry.Silies, Marion; Gohl, Daryl M; Fisher, Yvette E; Freifeld, Limor; Clark, Damon A; Clandinin, Thomas RNeuron2013 Jul 10111-2723849199
Cortical control of arm movements: a dynamical systems perspective.Shenoy, Krishna V; Sahani, Maneesh; Churchland, Mark MAnnual review of neuroscience2013 Jul 8337-5923725001
Specific kinematics and motor-related neurons for aversive chemotaxis in Drosophila.Gao, Xiaojing J; Potter, Christopher J; Gohl, Daryl M; Silies, Marion; Katsov, Alexander Y; Clandinin, Thomas R; Luo, LiqunCurrent biology : CB2013 Jul 81163-7223770185
Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding.Xu, Xinliang; Ge, Hao; Gu, Chan; Gao, Yi Qin; Wang, Siyuan S; Thio, Beng Joo Reginald; Hynes, James T; Xie, X Sunney; Cao, JianshuThe journal of physical chemistry. B2013 Jul 8NULL23795567
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli.Wimberly, Hallie; Shee, Chandan; Thornton, P C; Sivaramakrishnan, Priya; Rosenberg, Susan M; Hastings, P JNature communications2013 Jul 5211523828459
Great ape genetic diversity and population history.Prado-Martinez, Javier; Sudmant, Peter H; Kidd, Jeffrey M; Li, Heng; Kelley, Joanna L; Lorente-Galdos, Belen; Veeramah, Krishna R; Woerner, August E; O'Connor, Timothy D; Santpere, Gabriel; Cagan, Alexander; Theunert, Christoph; Casals, Ferran; Laayouni, Nature2013 Jul 3NULL23823723
Thalamocortical mechanisms for the anteriorization of alpha rhythms during propofol-induced unconsciousness.Vijayan, Sujith; Ching, Shinung; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy JThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Jul 311070-523825412
Cell-based measures of viral persistence are associated with immune activation and programmed cell death protein 1 (PD-1)-expressing CD4+ T cells.Hatano, Hiroyu; Jain, Vivek; Hunt, Peter W; Lee, Tzong-Hae; Sinclair, Elizabeth; Do, Tri D; Hoh, Rebecca; Martin, Jeffrey N; McCune, Joseph M; Hecht, Frederick; Busch, Michael P; Deeks, Steven GThe Journal of infectious diseases2013 Jul50-623089590
The relation between valence and arousal in subjective experience.Kuppens, Peter; Tuerlinckx, Francis; Russell, James A; Barrett, Lisa FeldmanPsychological bulletin2013 Jul917-4023231533
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.Gaj, Thomas; Gersbach, Charles A; Barbas 3rd, Carlos FTrends in biotechnology2013 Jul397-40523664777
A Reactive Oxygen Species (ROS)-Responsive Polymer for Safe, Efficient, and Targeted Gene Delivery in Cancer Cells.Shim, Min Suk; Xia, YounanAngewandte Chemie (International ed. in English)2013 Jul 16926-923716349
The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow.Blinder, Pablo; Tsai, Philbert S; Kaufhold, John P; Knutsen, Per M; Suhl, Harry; Kleinfeld, DavidNature neuroscience2013 Jul889-9723749145
A bacterial export system for generating extracellular amyloid aggregates.Sivanathan, Viknesh; Hochschild, AnnNature protocols2013 Jul1381-9023787895
Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.Reyon, Deepak; Maeder, Morgan L; Khayter, Cyd; Tsai, Shengdar Q; Foley, Jonathan E; Sander, Jeffry D; Joung, J KeithCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2013 JulUnit 12.1623821439
Stochastic cytokine expression induces mixed T helper cell States.Fang, Miaoqing; Xie, Huangming; Dougan, Stephanie K; Ploegh, Hidde; van Oudenaarden, AlexanderPLoS biology2013 Jule100161823935453
Choroid-plexus-derived Otx2 homeoprotein constrains adult cortical plasticity.Spatazza, Julien; Lee, Henry H C; Di Nardo, Ariel A; Tibaldi, Lorenzo; Joliot, Alain; Hensch, Takao K; Prochiantz, AlainCell reports2013 Jun 271815-2323770240
Homeostatic regulation of dendritic dynamics in a motor map in vivo.Kishore, Sandeep; Fetcho, Joseph RNature communications2013 Jun 27208623803587
High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells.Fu, Yanfang; Foden, Jennifer A; Khayter, Cyd; Maeder, Morgan L; Reyon, Deepak; Joung, J Keith; Sander, Jeffry DNature biotechnology2013 Jun 23NULL23792628
GABAergic lateral interactions tune the early stages of visual processing in Drosophila.Freifeld, Limor; Clark, Damon A; Schnitzer, Mark J; Horowitz, Mark A; Clandinin, Thomas RNeuron2013 Jun 191075-8923791198
piggyBac transposase tools for genome engineering.Li, Xianghong; Burnight, Erin R; Cooney, Ashley L; Malani, Nirav; Brady, Troy; Sander, Jeffry D; Staber, Janice; Wheelan, Sarah J; Joung, J Keith; McCray Jr, Paul B; Bushman, Frederic D; Sinn, Patrick L; Craig, Nancy LProceedings of the National Academy of Sciences of the United States of America2013 Jun 18E2279-8723723351
Photoacoustic and optical coherence tomography of epilepsy with high temporal and spatial resolution and dual optical contrasts.Tsytsarev, Vassiliy; Rao, Bin; Maslov, Konstantin I; Li, Li; Wang, Lihong VJournal of neuroscience methods2013 Jun 15142-523603664
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.Shalek, Alex K; Satija, Rahul; Adiconis, Xian; Gertner, Rona S; Gaublomme, Jellert T; Raychowdhury, Raktima; Schwartz, Schraga; Yosef, Nir; Malboeuf, Christine; Lu, Diana; Trombetta, John J; Gennert, Dave; Gnirke, Andreas; Goren, Alon; Hacohen, Nir; LevinNature2013 Jun 13236-4023685454
Real-time Closed-loop Control in a Rodent Model of Medically Induced Coma Using Burst Suppression.Ching, Shinung; Liberman, Max Y; Chemali, Jessica J; Westover, M Brandon; Kenny, Jonathan; Solt, Ken; Purdon, Patrick L; Brown, Emery NAnesthesiology2013 Jun 13NULL23770601
Synthetic nanoelectronic probes for biological cells and tissues.Tian, Bozhi; Lieber, Charles MAnnual review of analytical chemistry (Palo Alto, Calif.)2013 Jun 1231-5123451719
Microbial persistence and the road to drug resistance.Cohen, Nadia R; Lobritz, Michael A; Collins, James JCell host & microbe2013 Jun 12632-4223768488
Eosinophils secrete IL-4 to facilitate liver regeneration.Goh, Y P Sharon; Henderson, Neil C; Heredia, Jose E; Red Eagle, Alex; Odegaard, Justin I; Lehwald, Nadja; Nguyen, Khoa D; Sheppard, Dean; Mukundan, Lata; Locksley, Richard M; Chawla, AjayProceedings of the National Academy of Sciences of the United States of America2013 Jun 119914-923716700
Discovery of Cryptic Polyketide Metabolites from Dermatophytes Using Heterologous Expression in Aspergillus nidulans.Yin, Wen-Bing; Chooi, Yit Heng; Smith, Adam R; Cacho, Ralph A; Hu, Youcai; White, Theodore C; Tang, YiACS synthetic biology2013 Jun 1123758576
Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues.West Jr, Anthony P; Scharf, Louise; Horwitz, Joshua; Klein, Florian; Nussenzweig, Michel C; Bjorkman, Pamela JProceedings of the National Academy of Sciences of the United States of America2013 Jun 1023754383
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome.Modi, Sheetal R; Lee, Henry H; Spina, Catherine S; Collins, James JNature2013 Jun 9NULL23748443
Large-scale brain networks in affective and social neuroscience: towards an integrative functional architecture of the brain.Barrett, Lisa Feldman; Satpute, Ajay BhaskarCurrent opinion in neurobiology2013 Jun361-7223352202
TALEN-based Gene Correction for Epidermolysis Bullosa.Osborn, Mark J; Starker, Colby G; McElroy, Amber N; Webber, Beau R; Riddle, Megan J; Xia, Lily; Defeo, Anthony P; Gabriel, Richard; Schmidt, Manfred; Von Kalle, Christof; Carlson, Daniel F; Maeder, Morgan L; Joung, J Keith; Wagner, John E; Voytas, Daniel Molecular therapy : the journal of the American Society of Gene Therapy2013 Jun1151-923546300
Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces.Dethier, Julie; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna V; Boahen, KwabenaJournal of neural engineering2013 Jun03600823574919
Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces.Dethier, Julie; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna V; Boahen, KwabenaJournal of neural engineering2013 Jun3600823574919
Neural evidence that human emotions share core affective properties.Wilson-Mendenhall, Christine D; Barrett, Lisa Feldman; Barsalou, Lawrence WPsychological science2013 Jun947-5623603916
Progress in gene therapy for neurological disorders.Simonato, Michele; Bennett, Jean; Boulis, Nicholas M; Castro, Maria G; Fink, David J; Goins, William F; Gray, Steven J; Lowenstein, Pedro R; Vandenberghe, Luk H; Wilson, Thomas J; Wolfe, John H; Glorioso, Joseph CNature reviews. Neurology2013 Jun29823670108
Activity-dependent gene expression in honey bee mushroom bodies in response to orientation flight.Lutz, Claudia C; Robinson, Gene EThe Journal of experimental biology2013 Jun 12031-823678099
Neural control of sexually dimorphic behaviors.Manoli, Devanand S; Fan, Pu; Fraser, Eleanor J; Shah, Nirao MCurrent opinion in neurobiology2013 Jun330-823680385
The NADPH metabolic network regulates human ýýB-crystallin cardiomyopathy and reductive stress in Drosophila melanogaster.Xie, Heng B; Cammarato, Anthony; Rajasekaran, Namakkal S; Zhang, Huali; Suggs, Jennifer A; Lin, Ho-Chen; Bernstein, Sanford I; Benjamin, Ivor J; Golic, Kent GPLoS genetics2013 June100354423818860
Mapping and cracking sensorimotor circuits in genetic model organisms.Clark, Damon A; Freifeld, Limor; Clandinin, Thomas RNeuron2013 May 22583-9523719159
Evolutionary dynamics and information hierarchies in biological systems.Walker, Sara Imari; Callahan, Benjamin J; Arya, Gaurav; Barry, J David; Bhattacharya, Tanmoy; Grigoryev, Sergei; Pellegrini, Matteo; Rippe, Karsten; Rosenberg, Susan MAnnals of the New York Academy of Sciences2013 May 2023691975
Comparative analysis of RNA sequencing methods for degraded or low-input samples.Adiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; Deluca, David S; Busby, Michele A; Berlin, Aaron M; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua ZNature methods2013 May 1923685885
Fragment-based drug discovery using NMR spectroscopy.Harner, Mary J; Frank, Andreas O; Fesik, Stephen WJournal of biomolecular NMR2013 May 1823686385
An unsolved mystery: The target-recognizing RNA species of microRNA genes.Chen, Chang-ZhengBiochimie2013 May 1423685275
Statistical mechanics of Monod-Wyman-Changeux (MWC) models.Marzen, Sarah; Garcia, Hernan G; Phillips, RobJournal of molecular biology2013 May 131433-6023499654
Physiology: Inflammation links ageing to the brain.Gabuzda, Dana; Yankner, Bruce ANature2013 May 9197-823636321
One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.Wang, Haoyi; Yang, Hui; Shivalila, Chikdu S; Dawlaty, Meelad M; Cheng, Albert W; Zhang, Feng; Jaenisch, RudolfCell2013 May 9910-823643243
Sexually dimorphic neurons in the ventromedial hypothalamus govern mating in both sexes and aggression in males.Yang, Cindy F; Chiang, Michael C; Gray, Daniel C; Prabhakaran, Mahalakshmi; Alvarado, Maricruz; Juntti, Scott A; Unger, Elizabeth K; Wells, James A; Shah, Nirao MCell2013 May 9896-90923663785
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.Gaj, Thomas; Gersbach, Charles A; Barbas 3rd, Carlos FTrends in biotechnology2013 May 823664777
The Glove-like Structure of the Conserved Membrane Protein TatC Provides Insight into Signal Sequence Recognition in Twin-Arginine Translocation.Ramasamy, Sureshkumar; Abrol, Ravinder; Suloway, Christian J M; Clemons Jr, William MStructure (London, England : 1993)2013 May 7777-8823583035
Endothelial barrier disruption and recovery is controlled by substrate stiffness.Birukova, Anna A; Tian, Xinyong; Cokic, Ivan; Beckham, Yvonne; Gardel, Margaret L; Birukov, Konstantin GMicrovascular research2013 May50-723296034
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.Gebhardt, J Christof M; Suter, David M; Roy, Rahul; Zhao, Ziqing W; Chapman, Alec R; Basu, Srinjan; Maniatis, Tom; Xie, X SunneyNature methods2013 May421-623524394
Regulation of immune responses and tolerance: the microRNA perspective.Chen, Chang-Zheng; Schaffert, Steven; Fragoso, Rita; Loh, ChristinaImmunological reviews2013 May112-2823550642
Progress in gene therapy for neurological disorders.Simonato, Michele; Bennett, Jean; Boulis, Nicholas M; Castro, Maria G; Fink, David J; Goins, William F; Gray, Steven J; Lowenstein, Pedro R; Vandenberghe, Luk H; Wilson, Thomas J; Wolfe, John H; Glorioso, Joseph CNature reviews. Neurology2013 May277-9123609618
Connection between Oligomeric State and Gating Characteristics of Mechanosensitive Ion Channels.Haselwandter, Christoph A; Phillips, RobPLoS computational biology2013 Maye100305523696720
Surpassing fundamental limits of oscillators using nonlinear resonators.Villanueva, L G; Kenig, E; Karabalin, R B; Matheny, M H; Lifshitz, Ron; Cross, M C; Roukes, M LPhysical review letters2013 Apr 2617720823679770
Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1.Wu, Chuan; Yosef, Nir; Thalhamer, Theresa; Zhu, Chen; Xiao, Sheng; Kishi, Yasuhiro; Regev, Aviv; Kuchroo, Vijay KNature2013 Apr 25513-723467085
Dynamic regulatory network controlling TH17 cell differentiation.Yosef, Nir; Shalek, Alex K; Gaublomme, Jellert T; Jin, Hulin; Lee, Youjin; Awasthi, Amit; Wu, Chuan; Karwacz, Katarzyna; Xiao, Sheng; Jorgolli, Marsela; Gennert, David; Satija, Rahul; Shakya, Arvind; Lu, Diana Y; Trombetta, John J; Pillai, Meenu R; RatcliNature2013 Apr 25461-823467089
Altered social behavior and neuronal development in mice lacking the Uba6-Use1 ubiquitin transfer system.Lee, Peter C W; Dodart, Jean-Cosme; Aron, Liviu; Finley, Lydia W; Bronson, Roderick T; Haigis, Marcia C; Yankner, Bruce A; Harper, J WadeMolecular cell2013 Apr 25172-8423499007
TNF dually mediates resistance and susceptibility to mycobacteria via mitochondrial reactive oxygen species.Roca, Francisco J; Ramakrishnan, LalitaCell2013 Apr 25521-3423582643
Macrophage biology in development, homeostasis and disease.Wynn, Thomas A; Chawla, Ajay; Pollard, Jeffrey WNature2013 Apr 25445-5523619691
Generating Better Medicines for Cancer.Dunn, Stuart S; Byrne, James D; Perry, Jillian L; Chen, Kai; Desimone, Joseph MACS macro letters2013 Apr 24393-39723772351
Multifunctional three-dimensional macroporous nanoelectronic networks for smart materials.Liu, Jia; Xie, Chong; Dai, Xiaochuan; Jin, Lihua; Zhou, Wei; Lieber, Charles MProceedings of the National Academy of Sciences of the United States of America2013 Apr 236694-923569270
Functional inhibition of UQCRB suppresses angiogenesis in zebrafish.Cho, Yoon Sun; Jung, Hye Jin; Seok, Seung Hyeok; Payumo, Alexander Y; Chen, James K; Kwon, Ho JeongBiochemical and biophysical research communications2013 Apr 19396-40023454382
The immune system as a sensor of the metabolic state.Odegaard, Justin I; Chawla, AjayImmunity2013 Apr 18644-5423601683
Facile and stabile linkages through tyrosine: bioconjugation strategies with the tyrosine-click reaction.Ban, Hitoshi; Nagano, Masanobu; Gavrilyuk, Julia; Hakamata, Wataru; Inokuma, Tsubasa; Barbas 3rd, Carlos FBioconjugate chemistry2013 Apr 17520-3223534985
Higher frequency of genetic variants conferring increased risk for ADRs for commonly used drugs treating cancer, AIDS and tuberculosis in persons of African descent.Aminkeng, F; Ross, C J D; Rassekh, S R; Brunham, L R; Sistonen, J; Dube, M-P; Ibrahim, M; Nyambo, T B; Omar, S A; Froment, A; Bodo, J-M; Tishkoff, S; Carleton, B C; Hayden, M RThe pharmacogenomics journal2013 Apr 1623588107
Type 2 innate signals stimulate fibro/adipogenic progenitors to facilitate muscle regeneration.Heredia, Jose E; Mukundan, Lata; Chen, Francis M; Mueller, Alisa A; Deo, Rahul C; Locksley, Richard M; Rando, Thomas A; Chawla, AjayCell2013 Apr 11376-8823582327
Nonlinear mode-coupling in nanomechanical systems.Matheny, M H; Villanueva, L G; Karabalin, R B; Sader, J E; Roukes, M LNano letters2013 Apr 101622-623496001
Monitoring of post-translational modification dynamics with genetically encoded fluorescent reporters.Hertel, Fabian; Zhang, JinBiopolymers2013 Apr 10NULL23576192
Hunger-promoting hypothalamic neurons modulate effector and regulatory T-cell responses.Matarese, Giuseppe; Procaccini, Claudio; Menale, Ciro; Kim, Jae Geun; Kim, Jung Dae; Diano, Sabrina; Diano, Nadia; De Rosa, Veronica; Dietrich, Marcelo O; Horvath, Tamas LProceedings of the National Academy of Sciences of the United States of America2013 Apr 96193-823530205
A plasmon-assisted optofluidic (PAOF) system for measuring the photothermal conversion efficiencies of gold nanostructures and controlling an electrical switch.Zeng, Jie; Goldfeld, David; Xia, YounanAngewandte Chemie (International ed. in English)2013 Apr 84169-7323494970
How bacteria survive an acid trip.Hingorani, Karan S; Gierasch, Lila MProceedings of the National Academy of Sciences of the United States of America2013 Apr 25279-8023530238
Inferring evoked brain connectivity through adaptive perturbation.Lepage, Kyle Q; Ching, ShiNung; Kramer, Mark AJournal of computational neuroscience2013 Apr303-1822990598
Assessing the effects of pharmacological agents on respiratory dynamics using time-series modeling.Wong, Kin Foon Kevin; Gong, Jen J; Cotten, Joseph F; Solt, Ken; Brown, Emery NIEEE transactions on bio-medical engineering2013 Apr1118-2523193230
A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells.Gaj, Thomas; Mercer, Andrew C; Sirk, Shannon J; Smith, Heather L; Barbas 3rd, Carlos FNucleic acids research2013 Apr 13937-4623393187
Beyond transposons: the epigenetic and somatic functions of the Piwi-piRNA mechanism.Peng, Jamy C; Lin, HaifanCurrent opinion in cell biology2013 Apr190-423465540
Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli.Gat-Viks, Irit; Chevrier, Nicolas; Wilentzik, Roni; Eisenhaure, Thomas; Raychowdhury, Raktima; Steuerman, Yael; Shalek, Alex K; Hacohen, Nir; Amit, Ido; Regev, AvivNature biotechnology2013 Apr342-923503680
The fumagillin biosynthetic gene cluster in Aspergillus fumigatus encodes a cryptic terpene cyclase involved in the formation of ýý-trans-bergamotene.Lin, Hsiao-Ching; Chooi, Yit-Heng; Dhingra, Sourabh; Xu, Wei; Calvo, Ana M; Tang, YiJournal of the American Chemical Society2013 Mar 274616-923488861
Comparison study of gold nanohexapods, nanorods, and nanocages for photothermal cancer treatment.Wang, Yucai; Black, Kvar C L; Luehmann, Hannah; Li, Weiyang; Zhang, Yu; Cai, Xin; Wan, Dehui; Liu, Si-Yun; Li, Max; Kim, Paul; Li, Zhi-Yuan; Wang, Lihong V; Liu, Yongjian; Xia, YounanACS nano2013 Mar 262068-7723383982
Mammalian target of rapamycin complex 1 activation negatively regulates Polo-like kinase 2-mediated homeostatic compensation following neonatal seizures.Sun, Hongyu; Kosaras, Bela; Klein, Peter M; Jensen, Frances EProceedings of the National Academy of Sciences of the United States of America2013 Mar 265199-20423479645
Nanotools for neuroscience and brain activity mapping.Alivisatos, A Paul; Andrews, Anne M; Boyden, Edward S; Chun, Miyoung; Church, George M; Deisseroth, Karl; Donoghue, John P; Fraser, Scott E; Lippincott-Schwartz, Jennifer; Looger, Loren L; Masmanidis, Sotiris; McEuen, Paul L; Nurmikko, Arto V; Park, HongkACS nano2013 Mar 261850-6623514423
Molecular tools for chemical biotechnology.Galanie, Stephanie; Siddiqui, Michael S; Smolke, Christina DCurrent opinion in biotechnology2013 Mar 2223528237
Global analysis of phosphorylation networks in humans.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Hwang, Woochang; Neiswinger, John; Zhu, Heng; Zhang, Jin; Qian, JiangBiochimica et biophysica acta2013 Mar 2123524292
Global analysis of phosphorylation networks in humans.Hu, Jianfei; Rho, Hee-Sool; Newman, Robert H; Hwang, Woochang; Neiswinger, John; Zhu, Heng; Zhang, Jin; Qian, JiangBiochimica et biophysica acta2013 Mar 21NULL23524292
Reductive stress linked to small HSPs, G6PD, and Nrf2 pathways in heart disease.Brewer, Alison C; Mustafi, Soumyajit Banerjee; Murray, Thomas V A; Rajasekaran, Namakkal Soorappan; Benjamin, Ivor JAntioxidants & redox signaling2013 Mar 201114-2722938199
EcdGHK are three tailoring iron oxygenases for amino acid building blocks of the echinocandin scaffold.Jiang, Wei; Cacho, Ralph A; Chiou, Grace; Garg, Neil K; Tang, Yi; Walsh, Christopher TJournal of the American Chemical Society2013 Mar 204457-6623451921
Electroencephalogram signatures of loss and recovery of consciousness from propofol.Purdon, Patrick L; Pierce, Eric T; Mukamel, Eran A; Prerau, Michael J; Walsh, John L; Wong, Kin Foon K; Salazar-Gomez, Andres F; Harrell, Priscilla G; Sampson, Aaron L; Cimenser, Aylin; Ching, ShiNung; Kopell, Nancy J; Tavares-Stoeckel, Casie; Habeeb, KatProceedings of the National Academy of Sciences of the United States of America2013 Mar 19E1142-5123487781
Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D; Martell, Jeffrey D; Mootha, Vamsi K; Carr, Steven A; Ting, Alice YScience (New York, N.Y.)2013 Mar 151328-3123371551
Neuroscience. The brain activity map.Alivisatos, A Paul; Chun, Miyoung; Church, George M; Deisseroth, Karl; Donoghue, John P; Greenspan, Ralph J; McEuen, Paul L; Roukes, Michael L; Sejnowski, Terrence J; Weiss, Paul S; Yuste, RafaelScience (New York, N.Y.)2013 Mar 151284-523470729
High-sensitivity ultrasound-modulated optical tomography with a photorefractive polymer.Suzuki, Yuta; Lai, Puxiang; Xu, Xiao; Wang, LihongOptics letters2013 Mar 15899-90123503253
A major epigenetic programming mechanism guided by piRNAs.Huang, Xiao A; Yin, Hang; Sweeney, Sarah; Raha, Debasish; Snyder, Michael; Lin, HaifanDevelopmental cell2013 Mar 11502-1623434410
Early folding events protect aggregation-prone regions of a ýý-rich protein.Budyak, Ivan L; Krishnan, Beena; Marcelino-Cruz, Anna M; Ferrolino, Mylene C; Zhuravleva, Anastasia; Gierasch, Lila MStructure (London, England : 1993)2013 Mar 5476-8523454187
Investigation of neovascularization in three-dimensional porous scaffolds in vivo by a combination of multiscale photoacoustic microscopy and optical coherence tomography.Cai, Xin; Zhang, Yu; Li, Li; Choi, Sung-Wook; MacEwan, Matthew R; Yao, Junjie; Kim, Chulhong; Xia, Younan; Wang, Lihong VTissue engineering. Part C, Methods2013 Mar196-20422838500
Affective value and associative processing share a cortical substrate.Shenhav, Amitai; Barrett, Lisa Feldman; Bar, MosheCognitive, affective & behavioral neuroscience2013 Mar46-5923090717
Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.Depry, Charlene; Mehta, Sohum; Zhang, JinPflugers Archiv : European journal of physiology2013 Mar373-8123138230
Transcriptional reprogramming of mature CD4ýýý helper T cells generates distinct MHC class II-restricted cytotoxic T lymphocytes.Mucida, Daniel; Husain, Mohammad Mushtaq; Muroi, Sawako; van Wijk, Femke; Shinnakasu, Ryo; Naoe, Yoshinori; Reis, Bernardo Sgarbi; Huang, Yujun; Lambolez, Florence; Docherty, Michael; Attinger, Antoine; Shui, Jr-Wen; Kim, Gisen; Lena, Christopher J; SakagNature immunology2013 Mar281-923334788
Efficient genome editing in zebrafish using a CRISPR-Cas system.Hwang, Woong Y; Fu, Yanfang; Reyon, Deepak; Maeder, Morgan L; Tsai, Shengdar Q; Sander, Jeffry D; Peterson, Randall T; Yeh, J-R Joanna; Joung, J KeithNature biotechnology2013 Mar227-923360964
RNA-guided editing of bacterial genomes using CRISPR-Cas systems.Jiang, Wenyan; Bikard, David; Cox, David; Zhang, Feng; Marraffini, Luciano ANature biotechnology2013 Mar233-923360965
Long-term dynamics of CA1 hippocampal place codes.Ziv, Yaniv; Burns, Laurie D; Cocker, Eric D; Hamel, Elizabeth O; Ghosh, Kunal K; Kitch, Lacey J; El Gamal, Abbas; Schnitzer, Mark JNature neuroscience2013 Mar264-623396101
Robust, synergistic regulation of human gene expression using TALE activators.Maeder, Morgan L; Linder, Samantha J; Reyon, Deepak; Angstman, James F; Fu, Yanfang; Sander, Jeffry D; Joung, J KeithNature methods2013 Mar243-523396285
Bridging the transgenerational gap with epigenetic memory.Lim, Jana P; Brunet, AnneTrends in genetics : TIG2013 Mar176-8623410786
Photoacoustic Microscopy in Tissue Engineering.Cai, Xin; Zhang, Yu Shrike; Xia, Younan; Wang, Lihong VMaterials today (Kidlington, England)2013 Mar 167-7723766667
Simultaneous top-down modulation of the primary somatosensory cortex and thalamic nuclei during active tactile discrimination.Pais-Vieira, Miguel; Lebedev, Mikhail A; Wiest, Michael C; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Feb 274076-9323447616
Fungicidal drugs induce a common oxidative-damage cellular death pathway.Belenky, Peter; Camacho, Diogo; Collins, James JCell reports2013 Feb 21350-823416050
Multiplex genome engineering using CRISPR/Cas systems.Cong, Le; Ran, F Ann; Cox, David; Lin, Shuailiang; Barretto, Robert; Habib, Naomi; Hsu, Patrick D; Wu, Xuebing; Jiang, Wenyan; Marraffini, Luciano A; Zhang, FengScience (New York, N.Y.)2013 Feb 15819-2323287718
Genome mining of a prenylated and immunosuppressive polyketide from pathogenic fungi.Chooi, Yit-Heng; Fang, Jinxu; Liu, Hong; Filler, Scott G; Wang, Pin; Tang, YiOrganic letters2013 Feb 15780-323368997
Probing allostery through DNA.Kim, Sangjin; Brostromer, Erik; Xing, Dong; Jin, Jianshi; Chong, Shasha; Ge, Hao; Wang, Siyuan; Gu, Chan; Yang, Lijiang; Gao, Yi Qin; Su, Xiao-dong; Sun, Yujie; Xie, X SunneyScience (New York, N.Y.)2013 Feb 15816-923413354
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-ýý locus.Gomez, J Antonio; Wapinski, Orly L; Yang, Yul W; Bureau, Jean-Francois; Gopinath, Smita; Monack, Denise M; Chang, Howard Y; Brahic, Michel; Kirkegaard, KarlaCell2013 Feb 14743-5423415224
Design and synthesis of diverse functional kinked nanowire structures for nanoelectronic bioprobes.Xu, Lin; Jiang, Zhe; Qing, Quan; Mai, Liqiang; Zhang, Qingjie; Lieber, Charles MNano letters2013 Feb 13746-5123273386
Radioluminescent gold nanocages with controlled radioactivity for real-time in vivo imaging.Wang, Yucai; Liu, Yongjian; Luehmann, Hannah; Xia, Xiaohu; Wan, Dehui; Cutler, Cathy; Xia, YounanNano letters2013 Feb 13581-523360442
Synthesis of Ag nanocubes 18-32 nm in edge length: the effects of polyol on reduction kinetics, size control, and reproducibility.Wang, Yi; Zheng, Yiqun; Huang, Cheng Zhi; Xia, YounanJournal of the American Chemical Society2013 Feb 61941-5123317148
Investigation of fungal iterative polyketide synthase functions using partially assembled intermediates.Gao, Zhizeng; Wang, Jingjing; Norquay, Amy K; Qiao, Kangjian; Tang, Yi; Vederas, John CJournal of the American Chemical Society2013 Feb 61735-823356934
In vitro human corticogenesis.Wang, Yanling; Dolmetsch, RicardoNeuron2013 Feb 6379-8123395367
Mechanistic evaluation of the pros and cons of digital RT-LAMP for HIV-1 viral load quantification on a microfluidic device and improved efficiency via a two-step digital protocol.Sun, Bing; Shen, Feng; McCalla, Stephanie E; Kreutz, Jason E; Karymov, Mikhail A; Ismagilov, Rustem FAnalytical chemistry2013 Feb 51540-623324061
Engineering a BCR-ABL-activated caspase for the selective elimination of leukemic cells.Kurokawa, Manabu; Ito, Takahiro; Yang, Chih-Sheng; Zhao, Chen; Macintyre, Andrew N; Rizzieri, David A; Rathmell, Jeffrey C; Deininger, Michael W; Reya, Tannishtha; Kornbluth, SallyProceedings of the National Academy of Sciences of the United States of America2013 Feb 52300-523324740
Preclinical evaluation of HIV eradication strategies in the simian immunodeficiency virus-infected rhesus macaque: a pilot study testing inhibition of indoleamine 2,3-dioxygenase.Dunham, Richard M; Gordon, Shari N; Vaccari, Monica; Piatak, Michael; Huang, Yong; Deeks, Steven G; Lifson, Jeffrey; Franchini, Genoveffa; McCune, Joseph MAIDS research and human retroviruses2013 Feb207-1422924680
Single-cell analysis of ribonucleotide reductase transcriptional and translational response to DNA damage.Mazumder, Aprotim; Tummler, Katja; Bathe, Mark; Samson, Leona DMolecular and cellular biology2013 Feb635-4223184665
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.Bienko, Magda; Crosetto, Nicola; Teytelman, Leonid; Klemm, Sandy; Itzkovitz, Shalev; van Oudenaarden, AlexanderNature methods2013 Feb122-423263692
Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.Brynildsen, Mark P; Winkler, Jonathan A; Spina, Catherine S; MacDonald, I Cody; Collins, James JNature biotechnology2013 Feb160-523292609
Modeling Timothy syndrome with iPS cells.Yazawa, Masayuki; Dolmetsch, Ricardo EJournal of cardiovascular translational research2013 Feb1-923299782
Timothy syndrome is associated with activity-dependent dendritic retraction in rodent and human neurons.Krey, Jocelyn F; Pasca, Sergiu P; Shcheglovitov, Aleksandr; Yazawa, Masayuki; Schwemberger, Rachel; Rasmusson, Randall; Dolmetsch, Ricardo ENature neuroscience2013 Feb201-923313911
Hypothalamic control of energy balance: insights into the role of synaptic plasticity.Dietrich, Marcelo O; Horvath, Tamas LTrends in neurosciences2013 Feb65-7323318157
Physics. Measuring mass in seconds.Debs, John E; Robins, Nicholas P; Close, John DScience (New York, N.Y.)2013 Feb 1532-323372004
Systematic identification of signal-activated stochastic gene regulation.Neuert, Gregor; Munsky, Brian; Tan, Rui Zhen; Teytelman, Leonid; Khammash, Mustafa; van Oudenaarden, AlexanderScience (New York, N.Y.)2013 Feb 1584-723372015
Function of Piwi, a nuclear Piwi/Argonaute protein, is independent of its slicer activity.Darricarrere, Nicole; Liu, Na; Watanabe, Toshiaki; Lin, HaifanProceedings of the National Academy of Sciences of the United States of America2013 Jan 221297-30223297219
Quantitative analysis of the fate of gold nanocages in vitro and in vivo after uptake by U87-MG tumor cells.Cho, Eun Chul; Zhang, Yu; Cai, Xin; Moran, Christine M; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2013 Jan 211152-523225223
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.Graziano, Vito; McGrath, William J; Suomalainen, Maarit; Greber, Urs F; Freimuth, Paul; Blainey, Paul C; Luo, Guobin; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182059-6723043136
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.Graziano, Vito; Luo, Guobin; Blainey, Paul C; Perez-Berna, Ana J; McGrath, William J; Flint, S Jane; San Martin, Carmen; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182068-8023043137
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.Blainey, Paul C; Graziano, Vito; Perez-Berna, Ana J; McGrath, William J; Flint, S Jane; San Martin, Carmen; Xie, X Sunney; Mangel, Walter FThe Journal of biological chemistry2013 Jan 182092-10223043138
Controlling enzymatic action in living cells with a kinase-inducible bimolecular switch.Sample, Vedangi; Ni, Qiang; Mehta, Sohum; Inoue, Takanari; Zhang, JinACS chemical biology2013 Jan 18116-2123072367
Transcriptional silencing by single-stranded RNAs targeting a noncoding RNA that overlaps a gene promoter.Matsui, Masayuki; Prakash, Thazha P; Corey, David RACS chemical biology2013 Jan 18122-623082936
Pleiotropic actions of insulin resistance and inflammation in metabolic homeostasis.Odegaard, Justin I; Chawla, AjayScience (New York, N.Y.)2013 Jan 11172-723307735
Discovery of potent myeloid cell leukemia 1 (Mcl-1) inhibitors using fragment-based methods and structure-based design.Friberg, Anders; Vigil, Dominico; Zhao, Bin; Daniels, R Nathan; Burke, Jason P; Garcia-Barrantes, Pedro M; Camper, DeMarco; Chauder, Brian A; Lee, Taekyu; Olejniczak, Edward T; Fesik, Stephen WJournal of medicinal chemistry2013 Jan 1015-3023244564
Probing enzymatic activity inside living cells using a nanowire-cell "sandwich" assay.Na, Yu-Ran; Kim, So Yeon; Gaublomme, Jellert T; Shalek, Alex K; Jorgolli, Marsela; Park, Hongkun; Yang, Eun GyeongNano letters2013 Jan 9153-823244056
Accelerated high-yield generation of limb-innervating motor neurons from human stem cells.Amoroso, Mackenzie W; Croft, Gist F; Williams, Damian J; O'Keeffe, Sean; Carrasco, Monica A; Davis, Anne R; Roybon, Laurent; Oakley, Derek H; Maniatis, Tom; Henderson, Christopher E; Wichterle, HynekThe Journal of neuroscience : the official journal of the Society for Neuroscience2013 Jan 9574-8623303937
Deconvolving the roles of Wnt ligands and receptors in sensing and amplification.Tan, Rui Zhen; Ji, Ni; Mentink, Remco A; Korswagen, Hendrik C; van Oudenaarden, AlexanderMolecular systems biology2013 Jan 863123295860
Theoretical and experimental dissection of DNA loop-mediated repression.Boedicker, James Q; Garcia, Hernan G; Phillips, RobPhysical review letters2013 Jan 401810123383841
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.Sharon, Itai; Morowitz, Michael J; Thomas, Brian C; Costello, Elizabeth K; Relman, David A; Banfield, Jillian FGenome research2013 Jan111-2022936250
Antiepileptic effects of levetiracetam in a rodent neonatal seizure model.Talos, Delia M; Chang, Meayoung; Kosaras, Bela; Fitzgerald, Erin; Murphy, Andrew; Folkerth, Rebecca Dunn; Jensen, Frances EPediatric research2013 Jan24-3023138400
TALENs: a widely applicable technology for targeted genome editing.Joung, J Keith; Sander, Jeffry DNature reviews. Molecular cell biology2013 Jan49-5523169466
WholeCellKB: model organism databases for comprehensive whole-cell models.Karr, Jonathan R; Sanghvi, Jayodita C; Macklin, Derek N; Arora, Abhishek; Covert, Markus WNucleic acids research2013 JanD787-9223175606
Neovascularization in biodegradable inverse opal scaffolds with uniform and precisely controlled pore sizes.Choi, Sung-Wook; Zhang, Yu; Macewan, Matthew R; Xia, YounanAdvanced healthcare materials2013 Jan145-5423184495
Activation of D1 dopamine receptors induces emergence from isoflurane general anesthesia.Taylor, Norman E; Chemali, Jessica J; Brown, Emery N; Solt, KenAnesthesiology2013 Jan30-923221866
The smallest stroke: occlusion of one penetrating vessel leads to infarction and a cognitive deficit.Shih, Andy Y; Blinder, Pablo; Tsai, Philbert S; Friedman, Beth; Stanley, Geoffrey; Lyden, Patrick D; Kleinfeld, DavidNature neuroscience2013 Jan55-6323242312
The hundred-year emotion war: are emotions natural kinds or psychological constructions? Comment on Lench, Flores, and Bench (2011).Lindquist, Kristen A; Siegel, Erika H; Quigley, Karen S; Barrett, Lisa FeldmanPsychological bulletin2013 Jan255-6323294094
Single-cell and population NF-ýýB dynamic responses depend on lipopolysaccharide preparation.Gutschow, Miriam V; Hughey, Jacob J; Ruggero, Nicholas A; Bajar, Bryce T; Valle, Sean D; Covert, Markus WPloS one2013e5322223301045
Use of somatic mutations to quantify random contributions to mouse development.Zhou, Wenyu; Tan, Yunbing; Anderson, Donovan J; Crist, Eva M; Ruohola-Baker, Hannele; Salipante, Stephen J; Horwitz, Marshall SBMC genomics20133923327737
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.Lin, Audrie; Bik, Elisabeth M; Costello, Elizabeth K; Dethlefsen, Les; Haque, Rashidul; Relman, David A; Singh, UpinderPloS one2013e5383823349750
Medical school gift restriction policies and physician prescribing of newly marketed psychotropic medications: difference-in-differences analysis.King, Marissa; Essick, Connor; Bearman, Peter; Ross, Joseph SBMJ (Clinical research ed.)2013f26423372175
Perceiving invisible light through a somatosensory cortical prosthesis.Thomson, Eric E; Carra, Rafael; Nicolelis, Miguel A LNature communications2013148223403583
Synthetic biology: advancing the design of diverse genetic systems.Wang, Yen-Hsiang; Wei, Kathy Y; Smolke, Christina DAnnual review of chemical and biomolecular engineering201369-10223413816
Imaging trans-cellular neurexin-neuroligin interactions by enzymatic probe ligation.Liu, Daniel S; Loh, Ken H; Lam, Stephanie S; White, Katharine A; Ting, Alice YPloS one2013e5282323457442
Looking within the zebrafish to understand the tuberculous granuloma.Ramakrishnan, LalitaAdvances in experimental medicine and biology2013251-6623468113
Nanowire electrodes for high-density stimulation and measurement of neural circuits.Robinson, Jacob T; Jorgolli, Marsela; Park, HongkunFrontiers in neural circuits20133823486552
Homo-dimerization and ligand binding by the leucine-rich repeat domain at RHG1/RFS2 underlying resistance to two soybean pathogens.Afzal, Ahmed J; Srour, Ali; Goil, Abhishek; Vasudaven, Sheeja; Liu, Tianyun; Samudrala, Ram; Dogra, Navneet; Kohli, Punit; Malakar, Ayan; Lightfoot, David ABMC plant biology20134323497186
Macaque monkeys perceive the flash lag illusion.Subramaniyan, Manivannan; Ecker, Alexander S; Berens, Philipp; Tolias, Andreas SPloS one2013e5878823527024
Bumetanide enhances phenobarbital efficacy in a rat model of hypoxic neonatal seizures.Cleary, Ryan T; Sun, Hongyu; Huynh, Thanhthao; Manning, Simon M; Li, Yijun; Rotenberg, Alexander; Talos, Delia M; Kahle, Kristopher T; Jackson, Michele; Rakhade, Sanjay N; Berry, Gerard; Jensen, Frances EPloS one2013e5714823536761
Construction of human activity-based phosphorylation networks.Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu;Molecular systems biology201365523549483
Construction of human activity-based phosphorylation networks.Newman, Robert H; Hu, Jianfei; Rho, Hee-Sool; Xie, Zhi; Woodard, Crystal; Neiswinger, John; Cooper, Christopher; Shirley, Matthew; Clark, Hillary M; Hu, Shaohui; Hwang, Woochang; Jeong, Jun Seop; Wu, George; Lin, Jimmy; Gao, Xinxin; Ni, Qiang; Goel, Renu; Xia, Shuli; Ji, Hongkai; Dalby, Kevin N; Birnbaum, Morris J; Cole, Philip A; Knapp, Stefan; Ryazanov, Alexey G; Zack, Donald J; Blackshaw, Seth; Pawson, Tony; Gingras, Anne-Claude; Desiderio, Stephen; Pandey, Akhilesh; Turk, Benjamin E; Zhang, Jin; Zhu, Heng; Qian, JiangMolecular systems biology201365523549483
A real-time brain-machine interface combining motor target and trajectory intent using an optimal feedback control design.Shanechi, Maryam M; Williams, Ziv M; Wornell, Gregory W; Hu, Rollin C; Powers, Marissa; Brown, Emery NPloS one2013e5904923593130
Analysis of the murine immune response to pulmonary delivery of precisely fabricated nano- and microscale particles.Roberts, Reid A; Shen, Tammy; Allen, Irving C; Hasan, Warefta; DeSimone, Joseph M; Ting, Jenny P YPloS one2013e6211523593509
Biomimicry enhances sequential reactions of tethered glycolytic enzymes, TPI and GAPDHS.Mukai, Chinatsu; Gao, Lizeng; Bergkvist, Magnus; Nelson, Jacquelyn L; Hinchman, Meleana M; Travis, Alexander JPloS one2013e6143423626684
Structure prediction of partial-length protein sequences.Laurenzi, Adrian; Hung, Ling-Hong; Samudrala, RamInternational journal of molecular sciences201314892-90723867606
Heritable and precise zebrafish genome editing using a CRISPR-Cas system.Hwang, Woong Y; Fu, Yanfang; Reyon, Deepak; Maeder, Morgan L; Kaini, Prakriti; Sander, Jeffry D; Joung, J Keith; Peterson, Randall T; Yeh, Jing-Ruey JoannaPloS one2013e6870823874735
Synaptic state matching: a dynamical architecture for predictive internal representation and feature detection.Tavazoie, SaeedPloS one2013e7286523991161
p53 regulates Period2 expression and the circadian clock.Miki, Takao; Matsumoto, Tomoko; Zhao, Zhaoyang; Lee, Cheng ChiNature communications2013244424051492
AMP deaminase 3 deficiency enhanced 5'-AMP induction of hypometabolism.Daniels, Isadora Susan; O Brien 3rd, William G; Nath, Vinay; Zhao, Zhaoyang; Lee, Cheng ChiPloS one2013e7541824066180
Gene Expression Profiling of a Hypoxic Seizure Model of Epilepsy Suggests a Role for mTOR and Wnt Signaling in Epileptogenesis.Theilhaber, Joachim; Rakhade, Sanjay N; Sudhalter, Judy; Kothari, Nayantara; Klein, Peter; Pollard, Jack; Jensen, Frances EPloS one2013e7442824086344
Imaging energy status in live cells with a fluorescent biosensor of the intracellular ATP-to-ADP ratio.Tantama, Mathew; Martinez-Francois, Juan Ramon; Mongeon, Rebecca; Yellen, GaryNature communications2013255024096541
Real-time segmentation and tracking of brain metabolic state in ICU EEG recordings of burst suppression.Westover, M Brandon; Ching, ShiNung; Shafi, Mouhsin M; Cash, Sydney S; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20137108-1124111383
The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus.Dhingra, Sourabh; Lind, Abigail L; Lin, Hsiao-Ching; Tang, Yi; Rokas, Antonis; Calvo, Ana MPloS one2013e7714724116213
Three-dimensional mapping of microcircuit correlation structure.Cotton, R James; Froudarakis, Emmanouil; Storer, Patrick; Saggau, Peter; Tolias, Andreas SFrontiers in neural circuits201315124133414
Poly(dA:dT)-rich DNAs are highly flexible in the context of DNA looping.Johnson, Stephanie; Chen, Yi-Ju; Phillips, RobPloS one2013e7579924146776
Semiconductor-based DNA sequencing of histone modification states.Cheng, Christine S; Rai, Kunal; Garber, Manuel; Hollinger, Andrew; Robbins, Dana; Anderson, Scott; Macbeth, Alyssa; Tzou, Austin; Carneiro, Mauricio O; Raychowdhury, Raktima; Russ, Carsten; Hacohen, Nir; Gershenwald, Jeffrey E; Lennon, Niall; Nusbaum, ChaNature communications2013267224157732
Microbiome assembly across multiple body sites in low-birthweight infants.Costello, Elizabeth K; Carlisle, Erica M; Bik, Elisabeth M; Morowitz, Michael J; Relman, David AmBio2013e00782-1324169577
Simulating the evolution of the human family: cooperative breeding increases in harsh environments.Smaldino, Paul E; Newson, Lesley; Schank, Jeffrey C; Richerson, Peter JPloS one2013e8075324278318
National and local influenza surveillance through Twitter: an analysis of the 2012-2013 influenza epidemic.Broniatowski, David A; Paul, Michael J; Dredze, MarkPloS one2013e8367224349542
Higher CD27+CD8+ T cells percentages during suppressive antiretroviral therapy predict greater subsequent CD4+ T cell recovery in treated HIV infection.Seu, Lillian; Ortiz, Gabriel M; Epling, Lorrie; Sinclair, Elizabeth; Swainson, Louise A; Bajpai, Urmila D; Huang, Yong; Deeks, Steven G; Hunt, Peter W; Martin, Jeffrey N; McCune, Joseph MPloS one2013e8409124391889
Focused fluorescence excitation with time-reversed ultrasonically encoded light and imaging in thick scattering media.Lai, Puxiang; Suzuki, Yuta; Xu, Xiao; Wang, Lihong VLaser physics letters20137560424465244
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.Beliveau, Brian J; Joyce, Eric F; Apostolopoulos, Nicholas; Yilmaz, Feyza; Fonseka, Chamith Y; McCole, Ruth B; Chang, Yiming; Li, Jin Billy; Senaratne, Tharanga Niroshini; Williams, Benjamin R; Rouillard, Jean-Marie; Wu, Chao-tingProceedings of the National Academy of Sciences of the United States of America2012 Dec 2621301-623236188
Protein-protected Au clusters as a new class of nanoscale biosensor for label-free fluorescence detection of proteases.Wang, Yucai; Wang, Yi; Zhou, Fengbo; Kim, Paul; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2012 Dec 213769-7322969016
NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2.Durand, Severine; Patrizi, Annarita; Quast, Kathleen B; Hachigian, Lea; Pavlyuk, Roman; Saxena, Alka; Carninci, Piero; Hensch, Takao K; Fagiolini, MichelaNeuron2012 Dec 201078-9023259945
Antimicrobial Efflux Pumps and Mycobacterium Tuberculosis Drug Tolerance: Evolutionary Considerations.Szumowski, John D; Adams, Kristin N; Edelstein, Paul H; Ramakrishnan, LalitaCurrent topics in microbiology and immunology2012 Dec 16NULL23242857
Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress.Saikia, Mridusmita; Krokowski, Dawid; Guan, Bo-Jhih; Ivanov, Pavel; Parisien, Marc; Hu, Guo-fu; Anderson, Paul; Pan, Tao; Hatzoglou, MariaThe Journal of biological chemistry2012 Dec 1442708-2523086926
Nanowire-mediated delivery enables functional interrogation of primary immune cells: application to the analysis of chronic lymphocytic leukemia.Shalek, Alex K; Gaublomme, Jellert T; Wang, Lili; Yosef, Nir; Chevrier, Nicolas; Andersen, Mette S; Robinson, Jacob T; Pochet, Nathalie; Neuberg, Donna; Gertner, Rona S; Amit, Ido; Brown, Jennifer R; Hacohen, Nir; Regev, Aviv; Wu, Catherine J; Park, HongkNano letters2012 Dec 126498-50423190424
Spatial clusters of autism births and diagnoses point to contextual drivers ofýýincreased prevalence.Mazumdar, Soumya; Winter, Alix; Liu, Ka-Yuet; Bearman, PeterSocial science & medicine (1982)2012 Dec 823267775
Identity and function of a large gene network underlying mutagenic repair of DNA breaks.Al Mamun, Abu Amar M; Lombardo, Mary-Jane; Shee, Chandan; Lisewski, Andreas M; Gonzalez, Caleb; Lin, Dongxu; Nehring, Ralf B; Saint-Ruf, Claude; Gibson, Janet L; Frisch, Ryan L; Lichtarge, Olivier; Hastings, P J; Rosenberg, Susan MScience (New York, N.Y.)2012 Dec 71344-823224554
Glutamate receptor 1 phosphorylation at serine 831 and 845 modulates seizure susceptibility and hippocampal hyperexcitability after early life seizures.Rakhade, Sanjay N; Fitzgerald, Erin F; Klein, Peter M; Zhou, Chengwen; Sun, Hongyu; Huganir, Richard L; Hunganir, Richard L; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Dec 517800-1223223299
Understanding the TXA seizure connection.Schwinn, Debra A; Mackensen, G Burkhard; Brown, Emery NThe Journal of clinical investigation2012 Dec 34339-4123187134
Out of sight but not out of mind: unseen affective faces influence evaluations and social impressions.Anderson, Eric; Siegel, Erika; White, Dominique; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Dec1210-2122506501
Insights into tuberculosis from the zebrafish model.Berg, Russell D; Ramakrishnan, LalitaTrends in molecular medicine2012 Dec689-9023084762
Neural population partitioning and a concurrent brain-machine interface for sequential motor function.Shanechi, Maryam M; Hu, Rollin C; Powers, Marissa; Wornell, Gregory W; Brown, Emery N; Williams, Ziv MNature neuroscience2012 Dec1715-2223143511
Leptin and insulin pathways in POMC and AgRP neurons that modulate energy balance and glucose homeostasis.Varela, Luis; Horvath, Tamas LEMBO reports2012 Dec1079-8623146889
A high-performance neural prosthesis enabled by control algorithm design.Gilja, Vikash; Nuyujukian, Paul; Chestek, Cindy A; Cunningham, John P; Yu, Byron M; Fan, Joline M; Churchland, Mark M; Kaufman, Matthew T; Kao, Jonathan C; Ryu, Stephen I; Shenoy, Krishna VNature neuroscience2012 Dec1752-723160043
Generating extracellular amyloid aggregates using E. coli cells.Sivanathan, Viknesh; Hochschild, AnnGenes & development2012 Dec 12659-6723166018
Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy.Dedecker, Peter; Duwe, Sam; Neely, Robert K; Zhang, JinJournal of biomedical optics2012 Dec12600823208219
A marriage made to last in drug design.Dietrich, Marcelo O; Horvath, Tamas LNature medicine2012 Dec1737-823223057
Proprioceptive coupling within motor neurons drives C. elegans forward locomotion.Wen, Quan; Po, Michelle D; Hulme, Elizabeth; Chen, Sway; Liu, Xinyu; Kwok, Sen Wai; Gershow, Marc; Leifer, Andrew M; Butler, Victoria; Fang-Yen, Christopher; Kawano, Taizo; Schafer, William R; Whitesides, George; Wyart, Matthieu; Chklovskii, Dmitri B; ZheNeuron2012 Nov 21750-6123177960
Phosphoribosomes for fingerprinting neurons.Dietrich, Marcelo O; Horvath, Tamas LCell2012 Nov 21934-623178116
Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases.Michener, Joshua K; Nielsen, Jens; Smolke, Christina DProceedings of the National Academy of Sciences of the United States of America2012 Nov 2019504-923129650
A bioreducible polymer for efficient delivery of Fas-silencing siRNA into stem cell spheroids and enhanced therapeutic angiogenesis.Shim, Min Suk; Bhang, Suk Ho; Yoon, Kyunghwan; Choi, Kyunghee; Xia, YounanAngewandte Chemie (International ed. in English)2012 Nov 1911899-90323074025
AgRP neurons: a switch between peripheral carbohydrate and lipid utilization.Varela, Luis; Horvath, Tamas LThe EMBO journal2012 Nov 144252-423085989
Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils.Martinez-Avila, Olga; Wu, Shenping; Kim, Seung Joong; Cheng, Yifan; Khan, Feroz; Samudrala, Ram; Sali, Andrej; Horst, Jeremy A; Habelitz, StefanBiomacromolecules2012 Nov 123494-50222974364
Capturing the cloud: UAP56 in nuage assembly and function.Lin, HaifanCell2012 Nov 9699-70123141532
Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina.Li, Yong N; Tsujimura, Taro; Kawamura, Shoji; Dowling, John EThe Journal of comparative neurology2012 Nov 13786-80222907678
Macroporous nanowire nanoelectronic scaffolds for synthetic tissues.Tian, Bozhi; Liu, Jia; Dvir, Tal; Jin, Lihua; Tsui, Jonathan H; Qing, Quan; Suo, Zhigang; Langer, Robert; Kohane, Daniel S; Lieber, Charles MNature materials2012 Nov986-9422922448
Misacylation of tRNA with methionine in Saccharomyces cerevisiae.Wiltrout, Elizabeth; Goodenbour, Jeffrey M; Frechin, Mathieu; Pan, TaoNucleic acids research2012 Nov 110494-50622941646
Acoustic radiation force for vascular cell therapy: inýývitroýývalidation.Kaya, Mehmet; Toma, Catalin; Wang, Jianjun; Grata, Michelle; Fu, Huili; Villanueva, Flordeliza S; Chen, XucaiUltrasound in medicine & biology2012 Nov1989-9722975034
Chimeric TALE recombinases with programmable DNA sequence specificity.Mercer, Andrew C; Gaj, Thomas; Fuller, Roberta P; Barbas 3rd, Carlos FNucleic acids research2012 Nov11163-7223019222
A functional architecture of the human brain: emerging insights from the science of emotion.Lindquist, Kristen A; Barrett, Lisa FeldmanTrends in cognitive sciences2012 Nov533-4023036719
Iterative plug-and-play methodology for constructing and modifying synthetic gene networks.Litcofsky, Kevin D; Afeyan, Raffi B; Krom, Russell J; Khalil, Ahmad S; Collins, James JNature methods2012 Nov1077-8023042452
Leptin regulates glutamate and glucose transporters in hypothalamic astrocytes.Fuente-Martin, Esther; Garcia-Caceres, Cristina; Granado, Miriam; de Ceballos, Maria L; Sanchez-Garrido, Miguel Angel; Sarman, Beatrix; Liu, Zhong-Wu; Dietrich, Marcelo O; Tena-Sempere, Manuel; Argente-Arizon, Pilar; Diaz, Francisca; Argente, Jesus; HorvaThe Journal of clinical investigation2012 Nov 13900-1323064363
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.Martell, Jeffrey D; Deerinck, Thomas J; Sancak, Yasemin; Poulos, Thomas L; Mootha, Vamsi K; Sosinsky, Gina E; Ellisman, Mark H; Ting, Alice YNature biotechnology2012 Nov1143-823086203
Optimal operating points of oscillators using nonlinear resonators.Kenig, Eyal; Cross, M C; Villanueva, L G; Karabalin, R B; Matheny, M H; Lifshitz, Ron; Roukes, M LPhysical review. E, Statistical, nonlinear, and soft matter physics2012 Nov5620723214857
Shining light on nuclear-targeted therapy using gold nanostar constructs.Dam, Duncan Hieu M; Culver, Kayla S B; Sisco, Patrick N; Odom, Teri WTherapeutic delivery2012 Nov1263-723259247
Identification and characterization of the chaetoviridin and chaetomugilin gene cluster in Chaetomium globosum reveal dual functions of an iterative highly-reducing polyketide synthase.Winter, Jaclyn M; Sato, Michio; Sugimoto, Satoru; Chiou, Grace; Garg, Neil K; Tang, Yi; Watanabe, KenjiJournal of the American Chemical Society2012 Oct 3117900-323072467
FUS-SMN protein interactions link the motor neuron diseases ALS and SMA.Yamazaki, Tomohiro; Chen, Shi; Yu, Yong; Yan, Biao; Haertlein, Tyler C; Carrasco, Monica A; Tapia, Juan C; Zhai, Bo; Das, Rita; Lalancette-Hebert, Melanie; Sharma, Aarti; Chandran, Siddharthan; Sullivan, Gareth; Nishimura, Agnes Lumi; Shaw, Christopher E;Cell reports2012 Oct 25799-80623022481
Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli.Shee, Chandan; Gibson, Janet L; Rosenberg, Susan MCell reports2012 Oct 25714-2123041320
Intrinsic amygdala-cortical functional connectivity predicts social network size in humans.Bickart, Kevin C; Hollenbeck, Mark C; Barrett, Lisa Feldman; Dickerson, Bradford CThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1714729-4123077058
Oligodendrocyte regeneration after neonatal hypoxia requires FoxO1-mediated p27Kip1 expression.Jablonska, Beata; Scafidi, Joseph; Aguirre, Adan; Vaccarino, Flora; Nguyen, Vien; Borok, Erzsebet; Horvath, Tamas L; Rowitch, David H; Gallo, VittorioThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1714775-9323077062
A chemically programmed antibody is a long-lasting and potent inhibitor of influenza neuraminidase.Hayakawa, Masahiko; Toda, Narihiro; Carrillo, Nancy; Thornburg, Natalie J; Crowe Jr, James E; Barbas 3rd, Carlos FChembiochem : a European journal of chemical biology2012 Oct 152191-522965667
Identification and characterization of the echinocandin B biosynthetic gene cluster from Emericella rugulosa NRRL 11440.Cacho, Ralph A; Jiang, Wei; Chooi, Yit-Heng; Walsh, Christopher T; Tang, YiJournal of the American Chemical Society2012 Oct 1016781-9022998630
Stochastic facilitation of artificial tactile sensation in primates.Medina, Leonel E; Lebedev, Mikhail A; O'Doherty, Joseph E; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Oct 1014271-523055496
Transgenerational epigenetic effects of the Apobec1 cytidine deaminase deficiency on testicular germ cell tumor susceptibility and embryonic viability.Nelson, Vicki R; Heaney, Jason D; Tesar, Paul J; Davidson, Nicholas O; Nadeau, Joseph HProceedings of the National Academy of Sciences of the United States of America2012 Oct 9E2766-7322923694
Uncovering spatial topology represented by rat hippocampal population neuronal codes.Chen, Zhe; Kloosterman, Fabian; Brown, Emery N; Wilson, Matthew AJournal of computational neuroscience2012 Oct227-5522307459
Small heat shock proteins in redox metabolism: implications for cardiovascular diseases.Christians, Elisabeth S; Ishiwata, Takahiro; Benjamin, Ivor JThe international journal of biochemistry & cell biology2012 Oct1632-4522710345
Mapping of visual receptive fields by tomographic reconstruction.Pipa, Gordon; Chen, Zhe; Neuenschwander, Sergio; Lima, Bruss; Brown, Emery NNeural computation2012 Oct2543-7822734491
A real-time automated point-process method for the detection and correction of erroneous and ectopic heartbeats.Citi, Luca; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2012 Oct2828-3722875239
Multicolored stain-free histopathology with coherent Raman imaging.Freudiger, Christian W; Pfannl, Rolf; Orringer, Daniel A; Saar, Brian G; Ji, Minbiao; Zeng, Qing; Ottoboni, Linda; Wei, Ying; Ying, Wei; Waeber, Christian; Sims, John R; De Jager, Philip L; Sagher, Oren; Philbert, Martin A; Xu, Xiaoyin; Kesari, Santosh; XLaboratory investigation; a journal of technical methods and pathology2012 Oct1492-50222906986
Induction and molecular signature of pathogenic TH17 cells.Lee, Youjin; Awasthi, Amit; Yosef, Nir; Quintana, Francisco J; Xiao, Sheng; Peters, Anneli; Wu, Chuan; Kleinewietfeld, Markus; Kunder, Sharon; Hafler, David A; Sobel, Raymond A; Regev, Aviv; Kuchroo, Vijay KNature immunology2012 Oct991-922961052
Reversible switching between epigenetic states in honeybee behavioral subcastes.Herb, Brian R; Wolschin, Florian; Hansen, Kasper D; Aryee, Martin J; Langmead, Ben; Irizarry, Rafael; Amdam, Gro V; Feinberg, Andrew PNature neuroscience2012 Oct1371-322983211
Engineering designer transcription activator-like effector nucleases (TALENs) by REAL or REAL-Fast assembly.Reyon, Deepak; Khayter, Cyd; Regan, Maureen R; Joung, J Keith; Sander, Jeffry DCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2012 OctUnit 12.1523026907
Neuron-to-neuron transmission of ýý-synuclein fibrils through axonal transport.Freundt, Eric C; Maynard, Nate; Clancy, Eileen K; Roy, Shyamali; Bousset, Luc; Sourigues, Yannick; Covert, Markus; Melki, Ronald; Kirkegaard, Karla; Brahic, MichelAnnals of neurology2012 Oct517-2423109146
Disordered Protein Diffusion under Crowded Conditions.Wang, Yaqiang; Benton, Laura A; Singh, Vishavpreet; Pielak, Gary JThe journal of physical chemistry letters2012 Sep 202703-270623185649
Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase.Buganim, Yosef; Faddah, Dina A; Cheng, Albert W; Itskovich, Elena; Markoulaki, Styliani; Ganz, Kibibi; Klemm, Sandy L; van Oudenaarden, Alexander; Jaenisch, RudolfCell2012 Sep 141209-2222980981
Neutrophils exert protection in the early tuberculous granuloma by oxidative killing of mycobacteria phagocytosed from infected macrophages.Yang, Chao-Tsung; Cambier, C J; Davis, J Muse; Hall, Christopher J; Crosier, Philip S; Ramakrishnan, LalitaCell host & microbe2012 Sep 13301-1222980327
States of mind: emotions, body feelings, and thoughts share distributed neural networks.Oosterwijk, Suzanne; Lindquist, Kristen A; Anderson, Eric; Dautoff, Rebecca; Moriguchi, Yoshiya; Barrett, Lisa FeldmanNeuroImage2012 Sep2110-2822677148
Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.Cade, Lindsay; Reyon, Deepak; Hwang, Woong Y; Tsai, Shengdar Q; Patel, Samir; Khayter, Cyd; Joung, J Keith; Sander, Jeffry D; Peterson, Randall T; Yeh, Jing-Ruey JoannaNucleic acids research2012 Sep8001-1022684503
Sequence dependence of transcription factor-mediated DNA looping.Johnson, Stephanie; Linden, Martin; Phillips, RobNucleic acids research2012 Sep7728-3822718983
Minimal requirements for inhibition of MraY by lysis protein E from bacteriophage ýýX174.Tanaka, Shiho; Clemons Jr, William MMolecular microbiology2012 Sep975-8522742425
Limitations in anti-obesity drug development: the critical role of hunger-promoting neurons.Dietrich, Marcelo O; Horvath, Tamas LNature reviews. Drug discovery2012 Sep675-9122858652
Strategic protein target analysis for developing drugs to stop dental caries.Horst, J A; Pieper, U; Sali, A; Zhan, L; Chopra, G; Samudrala, R; Featherstone, J D BAdvances in dental research2012 Sep86-9322899687
Mouse ooplasm confers context-specific reprogramming capacity.Chan, Michelle M; Smith, Zachary D; Egli, Dieter; Regev, Aviv; Meissner, AlexanderNature genetics2012 Sep978-8022902786
Single-protein nanomechanical mass spectrometry in real time.Hanay, M S; Kelber, S; Naik, A K; Chi, D; Hentz, S; Bullard, E C; Colinet, E; Duraffourg, L; Roukes, M LNature nanotechnology2012 Sep602-822922541
Gross chromosomal rearrangement mediated by DNA replication in stressed cells: evidence from Escherichia coli.Moore, J M; Wimberly, Hallie; Thornton, P C; Rosenberg, Susan M; Hastings, P JAnnals of the New York Academy of Sciences2012 Sep103-922954223
A census of human soluble protein complexes.Havugimana, Pierre C; Hart, G Traver; Nepusz, Tamas; Yang, Haixuan; Turinsky, Andrei L; Li, Zhihua; Wang, Peggy I; Boutz, Daniel R; Fong, Vincent; Phanse, Sadhna; Babu, Mohan; Craig, Stephanie A; Hu, Pingzhao; Wan, Cuihong; Vlasblom, James; Dar, Vaqaar-unCell2012 Aug 311068-8122939629
The effect of particle size on the biodistribution of low-modulus hydrogel PRINT particles.Merkel, Timothy J; Chen, Kai; Jones, Stephen W; Pandya, Ashish A; Tian, Shaomin; Napier, Mary E; Zamboni, William E; DeDimone, Joseph MJournal of controlled release : official journal of the Controlled Release Society2012 Aug 2037-4422705460
Accelerated protein structure comparison using TM-score-GPU.Hung, Ling-Hong; Samudrala, RamBioinformatics (Oxford, England)2012 Aug 152191-222718788
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.Lachance, Joseph; Vernot, Benjamin; Elbers, Clara C; Ferwerda, Bart; Froment, Alain; Bodo, Jean-Marie; Lema, Godfrey; Fu, Wenqing; Nyambo, Thomas B; Rebbeck, Timothy R; Zhang, Kun; Akey, Joshua M; Tishkoff, Sarah ACell2012 Aug 3457-6922840920
A synthetic biology framework for programming eukaryotic transcription functions.Khalil, Ahmad S; Lu, Timothy K; Bashor, Caleb J; Ramirez, Cherie L; Pyenson, Nora C; Joung, J Keith; Collins, James JCell2012 Aug 3647-5822863014
Affective state influences perception by affecting decision parameters underlying bias and sensitivity.Lynn, Spencer K; Zhang, Xuan; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Aug726-3622251054
Engineering nanomedicines using stimuli-responsive biomaterials.Wang, Yapei; Byrne, James D; Napier, Mary E; DeSimone, Joseph MAdvanced drug delivery reviews2012 Aug1021-3022266128
A functional variant in FCRL3 is associated with higher Fc receptor-like 3 expression on T cell subsets and rheumatoid arthritis disease activity.Bajpai, Urmila D; Swainson, Louise A; Mold, Jeff E; Graf, Jonathan D; Imboden, John B; McCune, Joseph MArthritis and rheumatism2012 Aug2451-922392608
In vivo veritas, in vitro artificia.Matarese, Giuseppe; La Cava, Antonio; Horvath, Tamas LTrends in molecular medicine2012 Aug439-4222682514
AgRP neurons regulate development of dopamine neuronal plasticity and nonfood-associated behaviors.Dietrich, Marcelo O; Bober, Jeremy; Ferreira, Jozelia G; Tellez, Luis A; Mineur, Yann S; Souza, Diogo O; Gao, Xiao-Bing; Picciotto, Marina R; Araujo, Ivan; Liu, Zhong-Wu; Horvath, Tamas LNature neuroscience2012 Aug1108-1022729177
Structural diversity and African origin of the 17q21.31 inversion polymorphism.Steinberg, Karyn Meltz; Antonacci, Francesca; Sudmant, Peter H; Kidd, Jeffrey M; Campbell, Catarina D; Vives, Laura; Malig, Maika; Scheinfeldt, Laura; Beggs, William; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Bodo, Jean-Marie; FroNature genetics2012 Aug872-8022751100
Targeted gene knockout by direct delivery of zinc-finger nuclease proteins.Gaj, Thomas; Guo, Jing; Kato, Yoshio; Sirk, Shannon J; Barbas 3rd, Carlos FNature methods2012 Aug805-722751204
Wisdom of crowds for robust gene network inference.Marbach, Daniel; Costello, James C; Kuffner, Robert; Vega, Nicole M; Prill, Robert J; Camacho, Diogo M; Allison, Kyle R; DREAM5 Consortium; Kellis, Manolis; Collins, James J; Stolovitzky, GustavoNature methods2012 Aug796-80422796662
What sperm can teach us about energy production.Mukai, C; Travis, A JReproduction in domestic animals = Zuchthygiene2012 Aug164-922827366
Vectorization of optically sectioned brain microvasculature: learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments.Kaufhold, John P; Tsai, Philbert S; Blinder, Pablo; Kleinfeld, DavidMedical image analysis2012 Aug1241-5822854035
The human microbiome: ecosystem resilience and health.Relman, David ANutrition reviews2012 AugS2-922861804
Distributed control in a mean-field cortical network model: implications for seizure suppression.Ching, ShiNung; Brown, Emery N; Kramer, Mark APhysical review. E, Statistical, nonlinear, and soft matter physics2012 Aug02192023005798
Modeling human cortical development in vitro using induced pluripotent stem cells.Mariani, Jessica; Simonini, Maria Vittoria; Palejev, Dean; Tomasini, Livia; Coppola, Gianfilippo; Szekely, Anna M; Horvath, Tamas L; Vaccarino, Flora MProceedings of the National Academy of Sciences of the United States of America2012 Jul 3112770-522761314
ýý-Arrestin2 mediates the initiation and progression of myeloid leukemia.Fereshteh, Mark; Ito, Takahiro; Kovacs, Jeffrey J; Zhao, Chen; Kwon, Hyog Young; Tornini, Valerie; Konuma, Takaaki; Chen, Minyong; Lefkowitz, Robert J; Reya, TannishthaProceedings of the National Academy of Sciences of the United States of America2012 Jul 3112532-722773819
Estimation theoretic measure of resolution for stochastic localization microscopy.Fitzgerald, James E; Lu, Ju; Schnitzer, Mark JPhysical review letters2012 Jul 2704810223006110
Operator sequence alters gene expression independently of transcription factor occupancy in bacteria.Garcia, Hernan G; Sanchez, Alvaro; Boedicker, James Q; Osborne, Melisa; Gelles, Jeff; Kondev, Jane; Phillips, RobCell reports2012 Jul 26150-6122840405
An in vivo platform for rapid high-throughput antitubercular drug discovery.Takaki, Kevin; Cosma, Christine L; Troll, Mark A; Ramakrishnan, LalitaCell reports2012 Jul 26175-8422840407
A single-molecule Hershey-Chase experiment.Van Valen, David; Wu, David; Chen, Yi-Ju; Tuson, Hannah; Wiggins, Paul; Phillips, RobCurrent biology : CB2012 Jul 241339-4322727695
Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120.West Jr, Anthony P; Diskin, Ron; Nussenzweig, Michel C; Bjorkman, Pamela JProceedings of the National Academy of Sciences of the United States of America2012 Jul 24E2083-9022745174
The dawn of virtual cell biology.Freddolino, Peter L; Tavazoie, SaeedCell2012 Jul 20248-5022817888
A whole-cell computational model predicts phenotype from genotype.Karr, Jonathan R; Sanghvi, Jayodita C; Macklin, Derek N; Gutschow, Miriam V; Jacobs, Jared M; Bolival Jr, Benjamin; Assad-Garcia, Nacyra; Glass, John I; Covert, Markus WCell2012 Jul 20389-40122817898
Cyclic caged morpholinos: conformationally gated probes of embryonic gene function.Yamazoe, Sayumi; Shestopalov, Ilya A; Provost, Elayne; Leach, Steven D; Chen, James KAngewandte Chemie (International ed. in English)2012 Jul 96908-1122689470
Neural population dynamics during reaching.Churchland, Mark M; Cunningham, John P; Kaufman, Matthew T; Foster, Justin D; Nuyujukian, Paul; Ryu, Stephen I; Shenoy, Krishna VNature2012 Jul 551-622722855
Otx2 binding to perineuronal nets persistently regulates plasticity in the mature visual cortex.Beurdeley, Marine; Spatazza, Julien; Lee, Henry H C; Sugiyama, Sayaka; Bernard, Clemence; Di Nardo, Ariel A; Hensch, Takao K; Prochiantz, AlainThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Jul 49429-3722764251
Widely accessible method for superresolution fluorescence imaging of living systems.Dedecker, Peter; Mo, Gary C H; Dertinger, Thomas; Zhang, JinProceedings of the National Academy of Sciences of the United States of America2012 Jul 310909-1422711840
Two-photon microscopy as a tool to study blood flow and neurovascular coupling in the rodent brain.Shih, Andy Y; Driscoll, Jonathan D; Drew, Patrick J; Nishimura, Nozomi; Schaffer, Chris B; Kleinfeld, DavidJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism2012 Jul1277-30922293983
Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.Ramirez, Cherie L; Certo, Michael T; Mussolino, Claudio; Goodwin, Mathew J; Cradick, Thomas J; McCaffrey, Anton P; Cathomen, Toni; Scharenberg, Andrew M; Joung, J KeithNucleic acids research2012 Jul5560-822373919
How cells process information: quantification of spatiotemporal signaling dynamics.Ganesan, Ambhighainath; Zhang, JinProtein science : a publication of the Protein Society2012 Jul918-2822573643
General principles of single-construct chromosomal gene drive.Marshall, John M; Hay, Bruce AEvolution; international journal of organic evolution2012 Jul2150-6622759292
Sirtuin 1 and sirtuin 3: physiological modulators of metabolism.Nogueiras, Ruben; Habegger, Kirk M; Chaudhary, Nilika; Finan, Brian; Banks, Alexander S; Dietrich, Marcelo O; Horvath, Tamas L; Sinclair, David A; Pfluger, Paul T; Tschop, Matthias HPhysiological reviews2012 Jul1479-51422811431
Passive phase noise cancellation scheme.Kenig, Eyal; Cross, M C; Lifshitz, Ron; Karabalin, R B; Villanueva, L G; Matheny, M H; Roukes, M LPhysical review letters2012 Jun 2926410223004985
New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior.Ament, Seth A; Blatti, Charles A; Alaux, Cedric; Wheeler, Marsha M; Toth, Amy L; Le Conte, Yves; Hunt, Greg J; Guzman-Novoa, Ernesto; Degrandi-Hoffman, Gloria; Uribe-Rubio, Jose Luis; Amdam, Gro V; Page Jr, Robert E; Rodriguez-Zas, Sandra L; Robinson, GenProceedings of the National Academy of Sciences of the United States of America2012 Jun 26E1801-1022691501
Gut immune maturation depends on colonization with a host-specific microbiota.Chung, Hachung; Pamp, Sunje J; Hill, Jonathan A; Surana, Neeraj K; Edelman, Sanna M; Troy, Erin B; Reading, Nicola C; Villablanca, Eduardo J; Wang, Sen; Mora, Jorge R; Umesaki, Yoshinori; Mathis, Diane; Benoist, Christophe; Relman, David A; Kasper, DennisCell2012 Jun 221578-9322726443
The brain activity map project and the challenge of functional connectomics.Alivisatos, A Paul; Chun, Miyoung; Church, George M; Greenspan, Ralph J; Roukes, Michael L; Yuste, RafaelNeuron2012 Jun 21970-422726828
Subcortical neuronal ensembles: an analysis of motor task association, tremor, oscillations, and synchrony in human patients.Hanson, Timothy L; Fuller, Andrew M; Lebedev, Mikhail A; Turner, Dennis A; Nicolelis, Miguel A LThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Jun 208620-3222723703
Specific inactivation of two immunomodulatory SIGLEC genes during human evolution.Wang, Xiaoxia; Mitra, Nivedita; Secundino, Ismael; Banda, Kalyan; Cruz, Pedro; Padler-Karavani, Vered; Verhagen, Andrea; Reid, Chris; Lari, Martina; Rizzi, Ermanno; Balsamo, Carlotta; Corti, Giorgio; De Bellis, Gianluca; Longo, Laura; NISC Comparative SeqProceedings of the National Academy of Sciences of the United States of America2012 Jun 199935-4022665810
Discovery of small molecules that bind to K-Ras and inhibit Sos-mediated activation.Sun, Qi; Burke, Jason P; Phan, Jason; Burns, Michael C; Olejniczak, Edward T; Waterson, Alex G; Lee, Taekyu; Rossanese, Olivia W; Fesik, Stephen WAngewandte Chemie (International ed. in English)2012 Jun 186140-322566140
Talbot effect beyond the paraxial limit at optical frequencies.Hua, Yi; Suh, Jae Yong; Zhou, Wei; Huntington, Mark D; Odom, Teri WOptics express2012 Jun 1814284-9122714490
Outside looking in: nanotube transistor intracellular sensors.Gao, Ruixuan; Strehle, Steffen; Tian, Bozhi; Cohen-Karni, Tzahi; Xie, Ping; Duan, Xiaojie; Qing, Quan; Lieber, Charles MNano letters2012 Jun 133329-3322583370
Effect of aspect ratio and deformability on nanoparticle extravasation through nanopores.Kersey, Farrell R; Merkel, Timothy J; Perry, Jillian L; Napier, Mary E; DeSimone, Joseph MLangmuir : the ACS journal of surfaces and colloids2012 Jun 128773-8122612428
Antibiotic-induced bacterial cell death exhibits physiological and biochemical hallmarks of apoptosis.Dwyer, Daniel J; Camacho, Diogo M; Kohanski, Michael A; Callura, Jarred M; Collins, James JMolecular cell2012 Jun 8561-7222633370
The application of ecological theory toward an understanding of the human microbiome.Costello, Elizabeth K; Stagaman, Keaton; Dethlefsen, Les; Bohannan, Brendan J M; Relman, David AScience (New York, N.Y.)2012 Jun 81255-6222674335
FoxO1 target Gpr17 activates AgRP neurons to regulate food intake.Ren, Hongxia; Orozco, Ian J; Su, Ya; Suyama, Shigetomo; Gutierrez-Juarez, Roger; Horvath, Tamas L; Wardlaw, Sharon L; Plum, Leona; Arancio, Ottavio; Accili, DomenicoCell2012 Jun 81314-2622682251
Stress-induced variations in the stiffness of micro- and nanocantilever beams.Karabalin, R B; Villanueva, L G; Matheny, M H; Sader, J E; Roukes, M LPhysical review letters2012 Jun 823610123003973
Microbiota-targeted therapies: an ecological perspective.Lemon, Katherine P; Armitage, Gary C; Relman, David A; Fischbach, Michael AScience translational medicine2012 Jun 6137rv522674555
Targeting endoglin, an auxiliary transforming growth factor ýý coreceptor, to prevent fibrosis and heart failure.Benjamin, Ivor JCirculation2012 Jun 52689-9122592899
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).Pamp, Sunje J; Harrington, Eoghan D; Quake, Stephen R; Relman, David A; Blainey, Paul CGenome research2012 Jun1107-1922434425
The brain basis of emotion: a meta-analytic review.Lindquist, Kristen A; Wager, Tor D; Kober, Hedy; Bliss-Moreau, Eliza; Barrett, Lisa FeldmanThe Behavioral and brain sciences2012 Jun121-4322617651
Emotions are real.Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Jun413-2922642358
Cementomimetics-constructing a cementum-like biomineralized microlayer via amelogenin-derived peptides.Gungormus, Mustafa; Oren, Ersin E; Horst, Jeremy A; Fong, Hanson; Hnilova, Marketa; Somerman, Martha J; Snead, Malcolm L; Samudrala, Ram; Tamerler, Candan; Sarikaya, MehmetInternational journal of oral science2012 Jun69-7722743342
Rendering protein-based particles transiently insoluble for therapeutic applications.Xu, Jing; Wang, Jin; Luft, J Christopher; Tian, Shaomin; Owens Jr, Gary; Pandya, Ashish A; Berglund, Peter; Pohlhaus, Patrick; Maynor, Benjamin W; Smith, Jonathan; Hubby, Bolyn; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 308774-722568387
SIV replication in the infected rhesus macaque is limited by the size of the preexisting TH17 cell compartment.Hartigan-O'Connor, Dennis J; Abel, Kristina; Van Rompay, Koen K A; Kanwar, Bittoo; McCune, Joseph MScience translational medicine2012 May 30136ra6922649090
Brain-wide neuronal dynamics during motor adaptation in zebrafish.Ahrens, Misha B; Li, Jennifer M; Orger, Michael B; Robson, Drew N; Schier, Alexander F; Engert, Florian; Portugues, RubenNature2012 May 24471-722622571
Systematic discovery of structural elements governing stability of mammalian messenger RNAs.Goodarzi, Hani; Najafabadi, Hamed S; Oikonomou, Panos; Greco, Todd M; Fish, Lisa; Salavati, Reza; Cristea, Ileana M; Tavazoie, SaeedNature2012 May 10264-822495308
Synthetically encoded ultrashort-channel nanowire transistors for fast, pointlike cellular signal detection.Cohen-Karni, Tzahi; Casanova, Didier; Cahoon, James F; Qing, Quan; Bell, David C; Lieber, Charles MNano letters2012 May 92639-4422468846
Incorporation and controlled release of silyl ether prodrugs from PRINT nanoparticles.Parrott, Matthew C; Finniss, Mathew; Luft, J Chris; Pandya, Ashish; Gullapalli, Anuradha; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 97978-8222545784
Reductively responsive siRNA-conjugated hydrogel nanoparticles for gene silencing.Dunn, Stuart S; Tian, Shaomin; Blake, Steven; Wang, Jin; Galloway, Ashley L; Murphy, Andrew; Pohlhaus, Patrick D; Rolland, Jason P; Napier, Mary E; DeSimone, Joseph MJournal of the American Chemical Society2012 May 27423-3022475061
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.Pride, David T; Salzman, Julia; Haynes, Matthew; Rohwer, Forest; Davis-Long, Clara; White 3rd, Richard A; Loomer, Peter; Armitage, Gary C; Relman, David AThe ISME journal2012 May915-2622158393
A founder mutation in LEPRE1 carried by 1.5% of West Africans and 0.4% of African Americans causes lethal recessive osteogenesis imperfecta.Cabral, Wayne A; Barnes, Aileen M; Adeyemo, Adebowale; Cushing, Kelly; Chitayat, David; Porter, Forbes D; Panny, Susan R; Gulamali-Majid, Fizza; Tishkoff, Sarah A; Rebbeck, Timothy R; Gueye, Serigne M; Bailey-Wilson, Joan E; Brody, Lawrence C; Rotimi, ChaGenetics in medicine : official journal of the American College of Medical Genetics2012 May543-5122281939
High-side digitally current controlled biphasic bipolar microstimulator.Hanson, Timothy L; Omarsson, Bjorn; O'Doherty, Joseph E; Peikon, Ian D; Lebedev, Mikhail A; Nicolelis, Miguel A LIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2012 May331-4022328184
Dissociable large-scale networks anchored in the right anterior insula subserve affective experience and attention.Touroutoglou, Alexandra; Hollenbeck, Mark; Dickerson, Bradford C; Feldman Barrett, LisaNeuroImage2012 May 11947-5822361166
Following the fate of one insulin-reactive CD4 T cell: conversion into Teffs and Tregs in the periphery controls diabetes in NOD mice.Fousteri, Georgia; Jasinski, Jean; Dave, Amy; Nakayama, Maki; Pagni, Philippe; Lambolez, Florence; Juntti, Therese; Sarikonda, Ghanashyam; Cheng, Yang; Croft, Michael; Cheroutre, Hilde; Eisenbarth, George; von Herrath, MatthiasDiabetes2012 May1169-7922403296
Signaling-mediated bacterial persister formation.Vega, Nicole M; Allison, Kyle R; Khalil, Ahmad S; Collins, James JNature chemical biology2012 May431-322426114
Report of the National Heart, Lung, and Blood Institute Working Group on epigenetics and hypertension.Cowley Jr, Allen W; Nadeau, Joseph H; Baccarelli, Andrea; Berecek, Kathleen; Fornage, Myriam; Gibbons, Gary H; Harrison, David G; Liang, Mingyu; Nathanielsz, Peter W; O'Connor, Daniel T; Ordovas, Jose; Peng, Weiqun; Soares, Marcelo Bento; Szyf, Moshe; TolHypertension2012 May899-90522431584
Active emergence from propofol general anesthesia is induced by methylphenidate.Chemali, Jessica J; Van Dort, Christa J; Brown, Emery N; Solt, KenAnesthesiology2012 May998-100522446983
A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes.Slavov, Nikolai; Airoldi, Edoardo M; van Oudenaarden, Alexander; Botstein, DavidMolecular biology of the cell2012 May1986-9722456505
Six developmental trajectories characterize children with autism.Fountain, Christine; Winter, Alix S; Bearman, Peter SPediatrics2012 Maye1112-2022473372
FLASH assembly of TALENs for high-throughput genome editing.Reyon, Deepak; Tsai, Shengdar Q; Khayter, Cyd; Foden, Jennifer A; Sander, Jeffry D; Joung, J KeithNature biotechnology2012 May460-522484455
Revisiting the role of the granuloma in tuberculosis.Ramakrishnan, LalitaNature reviews. Immunology2012 May352-6622517424
Trends in ambulatory self-report: the role of momentary experience in psychosomatic medicine.Conner, Tamlin S; Barrett, Lisa FeldmanPsychosomatic medicine2012 May327-3722582330
A role for cytomegalovirus-specific CD4+CX3CR1+ T cells and cytomegalovirus-induced T-cell immunopathology in HIV-associated atherosclerosis.Sacre, Karim; Hunt, Peter W; Hsue, Priscilla Y; Maidji, Ekaterina; Martin, Jeffrey N; Deeks, Steven G; Autran, Brigitte; McCune, Joseph MAIDS (London, England)2012 Apr 24805-1422313962
Direct observation of nanoparticle-cancer cell nucleus interactions.Dam, Duncan Hieu M; Lee, Jung Heon; Sisco, Patrick N; Co, Dick T; Zhang, Ming; Wasielewski, Michael R; Odom, Teri WACS nano2012 Apr 243318-2622424173
Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics.Foti, James J; Devadoss, Babho; Winkler, Jonathan A; Collins, James J; Walker, Graham CScience (New York, N.Y.)2012 Apr 20315-922517853
A unique regulatory phase of DNA methylation in the early mammalian embryo.Smith, Zachary D; Chan, Michelle M; Mikkelsen, Tarjei S; Gu, Hongcang; Gnirke, Andreas; Regev, Aviv; Meissner, AlexanderNature2012 Apr 19339-4422456710
Using gene expression noise to understand gene regulation.Munsky, Brian; Neuert, Gregor; van Oudenaarden, AlexanderScience (New York, N.Y.)2012 Apr 13183-722499939
Blood T-cell receptor diversity decreases during the course of HIV infection, but the potential for a diverse repertoire persists.Baum, Paul D; Young, Jennifer J; Schmidt, Diane; Zhang, Qianjun; Hoh, Rebecca; Busch, Michael; Martin, Jeffrey; Deeks, Steven; McCune, Joseph MBlood2012 Apr 123469-7722371879
Genetic switchboard for synthetic biology applications.Callura, Jarred M; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2012 Apr 105850-522454498
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.Kuo, Alex J; Song, Jikui; Cheung, Peggie; Ishibe-Murakami, Satoko; Yamazoe, Sayumi; Chen, James K; Patel, Dinshaw J; Gozani, OrNature2012 Apr 5115-922398447
A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI.Entis, Jonathan J; Doerga, Priya; Barrett, Lisa Feldman; Dickerson, Bradford CNeuroImage2012 Apr 21226-3522245260
Interaction of ýý-synuclein and a cell penetrating fusion peptide with higher eukaryotic cell membranes assessed by ýýýýýF NMR.Zigoneanu, Imola G; Pielak, Gary JMolecular pharmaceutics2012 Apr 21024-922376087
Variations in the heme oxygenase-1 microsatellite polymorphism are associated with plasma CD14 and viral load in HIV-infected African-Americans.Seu, L; Burt, T D; Witte, J S; Martin, J N; Deeks, S G; McCune, J MGenes and immunity2012 Apr258-6722048453
Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa.Campbell, Michael C; Ranciaro, Alessia; Froment, Alain; Hirbo, Jibril; Omar, Sabah; Bodo, Jean-Marie; Nyambo, Thomas; Lema, Godfrey; Zinshteyn, Daniel; Drayna, Dennis; Breslin, Paul A S; Tishkoff, Sarah AMolecular biology and evolution2012 Apr1141-5322130969
Glutathione-dependent reductive stress triggers mitochondrial oxidation and cytotoxicity.Zhang, Huali; Limphong, Pattraranee; Pieper, Joel; Liu, Qiang; Rodesch, Christopher K; Christians, Elisabeth; Benjamin, Ivor JFASEB journal : official publication of the Federation of American Societies for Experimental Biology2012 Apr1442-5122202674
Cohort effects explain the increase in autism diagnosis among children born from 1992 to 2003 in California.Keyes, Katherine M; Susser, Ezra; Cheslack-Postava, Keely; Fountain, Christine; Liu, Kayuet; Bearman, Peter SInternational journal of epidemiology2012 Apr495-50322253308
Emotion words shape emotion percepts.Gendron, Maria; Lindquist, Kristen A; Barsalou, Lawrence; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2012 Apr314-2522309717
Avian intervertebral disc arises from rostral sclerotome and lacks a nucleus pulposus: implications for evolution of the vertebrate disc.Bruggeman, Bradley J; Maier, Jennifer A; Mohiuddin, Yasmin S; Powers, Rae; Lo, Yinting; Guimaraes-Camboa, Nuno; Evans, Sylvia M; Harfe, Brian DDevelopmental dynamics : an official publication of the American Association of Anatomists2012 Apr675-8322354863
MicroRNAs regulate B-cell receptor signaling-induced apoptosis.Kluiver, J L; Chen, C-ZGenes and immunity2012 Apr239-4422357493
Regulation of nuclear PKA revealed by spatiotemporal manipulation of cyclic AMP.Sample, Vedangi; DiPilato, Lisa M; Yang, Jason H; Ni, Qiang; Saucerman, Jeffrey J; Zhang, JinNature chemical biology2012 Apr375-8222366721
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.Vogel, Christine; Marcotte, Edward MNature reviews. Genetics2012 Apr227-3222411467
A recurrent neural network for closed-loop intracortical brain-machine interface decoders.Sussillo, David; Nuyujukian, Paul; Fan, Joline M; Kao, Jonathan C; Stavisky, Sergey D; Ryu, Stephen; Shenoy, KrishnaJournal of neural engineering2012 Apr02602722427488
Altered inhibition in tuberous sclerosis and type IIb cortical dysplasia.Talos, Delia M; Sun, Hongyu; Kosaras, Bela; Joseph, Annelise; Folkerth, Rebecca D; Poduri, Annapurna; Madsen, Joseph R; Black, Peter M; Jensen, Frances EAnnals of neurology2012 Apr539-5122447678
FoldEco: a model for proteostasis in E. coli.Powers, Evan T; Powers, David L; Gierasch, Lila MCell reports2012 Mar 29265-7622509487
Eye movements modulate the spatiotemporal dynamics of word processing.Temereanca, Simona; Hamalainen, Matti S; Kuperberg, Gina R; Stufflebeam, Steve M; Halgren, Eric; Brown, Emery NThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Mar 284482-9422457496
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees.Foret, Sylvain; Kucharski, Robert; Pellegrini, Matteo; Feng, Suhua; Jacobsen, Steven E; Robinson, Gene E; Maleszka, RyszardProceedings of the National Academy of Sciences of the United States of America2012 Mar 274968-7322416128
Regulated noise in the epigenetic landscape of development and disease.Pujadas, Elisabet; Feinberg, Andrew PCell2012 Mar 161123-3122424224
Large-scale integration of nanoelectromechanical systems for gas sensing applications.Bargatin, I; Myers, E B; Aldridge, J S; Marcoux, C; Brianceau, P; Duraffourg, L; Colinet, E; Hentz, S; Andreucci, P; Roukes, M LNano letters2012 Mar 141269-7422280452
Kinked p-n junction nanowire probes for high spatial resolution sensing and intracellular recording.Jiang, Zhe; Qing, Quan; Xie, Ping; Gao, Ruixuan; Lieber, Charles MNano letters2012 Mar 141711-622309132
Molecular determinants of scouting behavior in honey bees.Liang, Zhengzheng S; Nguyen, Trang; Mattila, Heather R; Rodriguez-Zas, Sandra L; Seeley, Thomas D; Robinson, Gene EScience (New York, N.Y.)2012 Mar 91225-822403390
Interaction of *-synuclein with vesicles that mimic mitochondrial membranes.Zigoneanu, Imola G; Yang, Yoo Jeong; Krois, Alexander S; Haque, Emdadul; Pielak, Gary JBiochimica et biophysica acta2012 Mar512-922155643
Intracellular recordings of action potentials by an extracellular nanoscale field-effect transistor.Duan, Xiaojie; Gao, Ruixuan; Xie, Ping; Cohen-Karni, Tzahi; Qing, Quan; Choe, Hwan Sung; Tian, Bozhi; Jiang, Xiaocheng; Lieber, Charles MNature nanotechnology2012 Mar174-922179566
Broad range of neural dynamics from a time-varying FitzHugh-Nagumo model and its spiking threshold estimation.Faghih, Rose T; Savla, Ketan; Dahleh, Munther A; Brown, Emery NIEEE transactions on bio-medical engineering2012 Mar816-2322186931
Vertical nanowire electrode arrays as a scalable platform for intracellular interfacing to neuronal circuits.Robinson, Jacob T; Jorgolli, Marsela; Shalek, Alex K; Yoon, Myung-Han; Gertner, Rona S; Park, HongkunNature nanotechnology2012 Mar180-422231664
Chronic in vivo imaging in the mouse spinal cord using an implanted chamber.Farrar, Matthew J; Bernstein, Ida M; Schlafer, Donald H; Cleland, Thomas A; Fetcho, Joseph R; Schaffer, Chris BNature methods2012 Mar297-30222266542
Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development.Shestopalov, Ilya A; Pitt, Cameron L W; Chen, James KNature chemical biology2012 Mar270-622286130
Point process time-frequency analysis of dynamic respiratory patterns during meditation practice.Kodituwakku, Sandun; Lazar, Sara W; Indic, Premananda; Chen, Zhe; Brown, Emery N; Barbieri, RiccardoMedical & biological engineering & computing2012 Mar261-7522350435
Connecting Type 1 and Type 2 Diabetes through Innate Immunity.Odegaard, Justin I; Chawla, AjayCold Spring Harbor perspectives in medicine2012 Mara00772422393536
Requirements for contractility in disordered cytoskeletal bundles.Lenz, Martin; Gardel, Margaret L; Dinner, Aaron RNew journal of physics2012 Mar 123155355
Modifying the pores of an inverse opal scaffold with chitosan microstructures for truly three-dimensional cell culture.Zhang, Yu; Choi, Sung-Wook; Xia, YounanMacromolecular rapid communications2012 Feb 27296-30122231861
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.Bumgarner, Stacie L; Neuert, Gregor; Voight, Benjamin F; Symbor-Nagrabska, Anna; Grisafi, Paula; van Oudenaarden, Alexander; Fink, Gerald RMolecular cell2012 Feb 24470-8222264825
Disease tolerance as a defense strategy.Medzhitov, Ruslan; Schneider, David S; Soares, Miguel PScience (New York, N.Y.)2012 Feb 24936-4122363001
Functional biases in visual cortex neurons with identified projections to higher cortical targets.Jarosiewicz, Beata; Schummers, James; Malik, Wasim Q; Brown, Emery N; Sur, MrigankaCurrent biology : CB2012 Feb 21269-7722305753
A neurophysiological-metabolic model for burst suppression.Ching, Shinung; Purdon, Patrick L; Vijayan, Sujith; Kopell, Nancy J; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America2012 Feb 213095-10022323592
A high-throughput fluorescence polarization anisotropy assay for the 70N domain of replication protein A.Souza-Fagundes, Elaine M; Frank, Andreas O; Feldkamp, Michael D; Dorset, Daniel C; Chazin, Walter J; Rossanese, Olivia W; Olejniczak, Edward T; Fesik, Stephen WAnalytical biochemistry2012 Feb 15742-922197419
Loss of autophagy in pro-opiomelanocortin neurons perturbs axon growth and causes metabolic dysregulation.Coupe, Berengere; Ishii, Yuko; Dietrich, Marcelo O; Komatsu, Masaaki; Horvath, Tamas L; Bouret, Sebastien GCell metabolism2012 Feb 8247-5522285542
Confinement of gene drive systems to local populations: a comparative analysis.Marshall, John M; Hay, Bruce AJournal of theoretical biology2012 Feb 7153-7122094363
Thymosin beta 4 is dispensable for murine cardiac development and function.Banerjee, Indroneal; Zhang, Jianlin; Moore-Morris, Thomas; Lange, Stephan; Shen, Tao; Dalton, Nancy D; Gu, Yusu; Peterson, Kirk L; Evans, Sylvia M; Chen, JuCirculation research2012 Feb 3456-6422158707
Host genotype-specific therapies can optimize the inflammatory response to mycobacterial infections.Tobin, David M; Roca, Francisco J; Oh, Sungwhan F; McFarland, Ross; Vickery, Thad W; Ray, John P; Ko, Dennis C; Zou, Yuxia; Bang, Nguyen D; Chau, Tran T H; Vary, Jay C; Hawn, Thomas R; Dunstan, Sarah J; Farrar, Jeremy J; Thwaites, Guy E; King, Mary-ClaireCell2012 Feb 3434-4622304914
Modular genetic control of sexually dimorphic behaviors.Xu, Xiaohong; Coats, Jennifer K; Yang, Cindy F; Wang, Amy; Ahmed, Osama M; Alvarado, Maricruz; Izumi, Tetsuro; Shah, Nirao MCell2012 Feb 3596-60722304924
Optimality in the development of intestinal crypts.Itzkovitz, Shalev; Blat, Irene C; Jacks, Tyler; Clevers, Hans; van Oudenaarden, AlexanderCell2012 Feb 3608-1922304925
Hematopoietic-stem-cell-based gene therapy for HIV disease.Kiem, Hans-Peter; Jerome, Keith R; Deeks, Steven G; McCune, Joseph MCell stem cell2012 Feb 3137-4722305563
Prospect for feedback guided surgery with ultra-short pulsed laser light.Jeong, Diana C; Tsai, Philbert S; Kleinfeld, DavidCurrent opinion in neurobiology2012 Feb24-3322088392
Synthesis of monolithic graphene-graphite integrated electronics.Park, Jang-Ung; Nam, SungWoo; Lee, Mi-Sun; Lieber, Charles MNature materials2012 Feb120-522101813
Local electrical potential detection of DNA by nanowire-nanopore sensors.Xie, Ping; Xiong, Qihua; Fang, Ying; Qing, Quan; Lieber, Charles MNature nanotechnology2012 Feb119-2522157724
Balancing repair and tolerance of DNA damage caused by alkylating agents.Fu, Dragony; Calvo, Jennifer A; Samson, Leona DNature reviews. Cancer2012 Feb104-2022237395
Organization of vomeronasal sensory coding revealed by fast volumetric calcium imaging.Turaga, Diwakar; Holy, Timothy EThe Journal of neuroscience : the official journal of the Society for Neuroscience2012 Feb 11612-2122302803
Quantitative analysis of the role played by poly(vinylpyrrolidone) in seed-mediated growth of Ag nanocrystals.Xia, Xiaohu; Zeng, Jie; Oetjen, L Kyle; Li, Qingge; Xia, YounanJournal of the American Chemical Society2012 Jan 251793-80122206387
Quantifying the coverage density of poly(ethylene glycol) chains on the surface of gold nanostructures.Xia, Xiaohu; Yang, Miaoxin; Wang, Yucai; Zheng, Yiqun; Li, Qingge; Chen, Jingyi; Xia, YounanACS nano2012 Jan 24512-2222148912
SV119-gold nanocage conjugates: a new platform for targeting cancer cells via sigma-2 receptors.Wang, Yucai; Xu, Jinbin; Xia, Xiaohu; Yang, Miaoxin; Vangveravong, Suwanna; Chen, Jingyi; Mach, Robert H; Xia, YounanNanoscale2012 Jan 21421-422113350
Extraordinary nonlinear absorption in 3D bowtie nanoantennas.Suh, Jae Yong; Huntington, Mark D; Kim, Chul Hoon; Zhou, Wei; Wasielewski, Michael R; Odom, Teri WNano letters2012 Jan 11269-7422149352
Delivery of multiple siRNAs using lipid-coated PLGA nanoparticles for treatment of prostate cancer.Hasan, Warefta; Chu, Kevin; Gullapalli, Anuradha; Dunn, Stuart S; Enlow, Elizabeth M; Luft, J Christopher; Tian, Shaomin; Napier, Mary E; Pohlhaus, Patrick D; Rolland, Jason P; DeSimone, Joseph MNano letters2012 Jan 11287-9222165988
Electrospun nanofibers for regenerative medicine.Liu, Wenying; Thomopoulos, Stavros; Xia, YounanAdvanced healthcare materials2012 Jan 1110-2523184683
Genetic dissection reveals two separate retinal substrates for polarization vision in Drosophila.Wernet, Mathias F; Velez, Mariel M; Clark, Damon A; Baumann-Klausener, Franziska; Brown, Julian R; Klovstad, Martha; Labhart, Thomas; Clandinin, Thomas RCurrent biology : CB2012 Jan 1012-2022177904
Obesity is associated with hypothalamic injury in rodents and humans.Thaler, Joshua P; Yi, Chun-Xia; Schur, Ellen A; Guyenet, Stephan J; Hwang, Bang H; Dietrich, Marcelo O; Zhao, Xiaolin; Sarruf, David A; Izgur, Vitaly; Maravilla, Kenneth R; Nguyen, Hong T; Fischer, Jonathan D; Matsen, Miles E; Wisse, Brent E; Morton, GregThe Journal of clinical investigation2012 Jan 3153-6222201683
Early postmyocardial infarction survival in Murphy Roths Large mice is mediated by attenuated apoptosis and inflammation but depends on genetic background.Hunt, Darlene L; Campbell, Patrick H; Zambon, Alexander C; Vranizan, Karen; Evans, Sylvia M; Kuo, Hai-Chien; Yamaguchi, Ken D; Omens, Jeffrey H; McCulloch, Andrew DExperimental physiology2012 Jan102-1421967898
Proteostasis and REDOX state in the heart.Christians, Elisabeth S; Benjamin, Ivor JAmerican journal of physiology. Heart and circulatory physiology2012 Jan 1H24-3722003057
Single-molecule transcript counting of stem-cell markers in the mouse intestine.Itzkovitz, Shalev; Lyubimova, Anna; Blat, Irene C; Maynard, Mindy; van Es, Johan; Lees, Jacqueline; Jacks, Tyler; Clevers, Hans; van Oudenaarden, AlexanderNature cell biology2012 Jan106-1422119784
Decoding cell lineage from acquired mutations using arbitrary deep sequencing.Carlson, Cheryl A; Kas, Arnold; Kirkwood, Robert; Hays, Laura E; Preston, Bradley D; Salipante, Stephen J; Horwitz, Marshall SNature methods2012 Jan78-8022120468
Microbial environments confound antibiotic efficacy.Lee, Henry H; Collins, James JNature chemical biology2012 Jan6-922173343
Virtual active touch using randomly patterned intracortical microstimulation.O'Doherty, Joseph E; Lebedev, Mikhail A; Li, Zheng; Nicolelis, Miguel A LIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2012 Jan85-9322207642
Tolerance of infections.Ayres, Janelle S; Schneider, David SAnnual review of immunology2012271-9422224770
MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.Chindelevitch, Leonid; Stanley, Sarah; Hung, Deborah; Regev, Aviv; Berger, BonnieGenome biology2012r622292986
Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting.Maynard, Nathaniel D; Macklin, Derek N; Kirkegaard, Karla; Covert, Markus WMolecular systems biology201256722294093
Gene delivery to the retina: from mouse to man.Bennett, Jean; Chung, Daniel C; Maguire, AlbertMethods in enzymology2012255-7422365778
State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data.Shimazaki, Hideaki; Amari, Shun-Ichi; Brown, Emery N; Grun, SonjaPLoS computational biology2012e100238522412358
Single-cell census of mechanosensitive channels in living bacteria.Bialecka-Fornal, Maja; Lee, Heun Jin; DeBerg, Hannah A; Gandhi, Chris S; Phillips, RobPloS one2012e3307722427953
A polished and reinforced thinned-skull window for long-term imaging of the mouse brain.Shih, Andy Y; Mateo, Celine; Drew, Patrick J; Tsai, Philbert S; Kleinfeld, DavidJournal of visualized experiments : JoVE201222433225
Entropic tension in crowded membranes.Linden, Martin; Sens, Pierre; Phillips, RobPLoS computational biology2012e100243122438801
Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior.Freddolino, Peter L; Tavazoie, SaeedAnnual review of cell and developmental biology2012363-8422559263
The interaction between early life epilepsy and autistic-like behavioral consequences: a role for the mammalian target of rapamycin (mTOR) pathway.Talos, Delia M; Sun, Hongyu; Zhou, Xiangping; Fitzgerald, Erin C; Jackson, Michele C; Klein, Peter M; Lan, Victor J; Joseph, Annelise; Jensen, Frances EPloS one2012e3588522567115
Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines.Powell, Ashley A; Talasaz, Amirali H; Zhang, Haiyu; Coram, Marc A; Reddy, Anupama; Deng, Glenn; Telli, Melinda L; Advani, Ranjana H; Carlson, Robert W; Mollick, Joseph A; Sheth, Shruti; Kurian, Allison W; Ford, James M; Stockdale, Frank E; Quake, Stephen PloS one2012e3378822586443
Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs).Moore, Finola E; Reyon, Deepak; Sander, Jeffry D; Martinez, Sarah A; Blackburn, Jessica S; Khayter, Cyd; Ramirez, Cherie L; Joung, J Keith; Langenau, David MPloS one2012e3787722655075
Generation of induced pluripotent stem cells from the prairie vole.Manoli, Devanand S; Subramanyam, Deepa; Carey, Catriona; Sudin, Erik; Van Westerhuyzen, Julie A; Bales, Karen L; Blelloch, Robert; Shah, Nirao MPloS one2012e3811922675440
Hydroxychloroquine is associated with impaired interferon-alpha and tumor necrosis factor-alpha production by plasmacytoid dendritic cells in systemic lupus erythematosus.Sacre, Karim; Criswell, Lindsey A; McCune, Joseph MArthritis research & therapy2012R15522734582
Context matters: the illusive simplicity of macaque V1 receptive fields.Haslinger, Robert; Pipa, Gordon; Lima, Bruss; Singer, Wolf; Brown, Emery N; Neuenschwander, SergioPloS one2012e3969922802940
Mechanisms of intracellular scaling.Levy, Daniel L; Heald, RebeccaAnnual review of cell and developmental biology2012113-3522804576
Reprogramming movements: extraction of motor intentions from cortical ensemble activity when movement goals change.Ifft, Peter J; Lebedev, Mikhail A; Nicolelis, Miguel A LFrontiers in neuroengineering20121622826698
Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains.Cong, Le; Zhou, Ruhong; Kuo, Yu-Chi; Cunniff, Margaret; Zhang, FengNature communications201296822828628
The disappearing seasonality of autism conceptions in California.Mazumdar, Soumya; Liu, Ka-Yuet; Susser, Ezra; Bearman, PeterPloS one2012e4126522859972
HSPB2 is dispensable for the cardiac hypertrophic response but reduces mitochondrial energetics following pressure overload in mice.Ishiwata, Takahiro; Orosz, Andras; Wang, Xiaohui; Mustafi, Soumyajit Banerjee; Pratt, Gregory W; Christians, Elisabeth S; Boudina, Sihem; Abel, E Dale; Benjamin, Ivor JPloS one2012e4211822870288
UCP2 induced by natural birth regulates neuronal differentiation of the hippocampus and related adult behavior.Simon-Areces, Julia; Dietrich, Marcelo O; Hermes, Gretchen; Garcia-Segura, Luis Miguel; Arevalo, Maria-Angeles; Horvath, Tamas LPloS one2012e4291122905184
Modulating the strength and threshold of NOTCH oncogenic signals by mir-181a-1/b-1.Fragoso, Rita; Mao, Tin; Wang, Song; Schaffert, Steven; Gong, Xue; Yue, Sibiao; Luong, Richard; Min, Hyeyoung; Yashiro-Ohtani, Yumi; Davis, Mark; Pear, Warren; Chen, Chang-ZhengPLoS genetics2012e100285522916024
Upregulation of retinal dehydrogenase 2 in alternatively activated macrophages during retinoid-dependent type-2 immunity to helminth infection in mice.Broadhurst, Mara J; Leung, Jacqueline M; Lim, K C; Girgis, Natasha M; Gundra, Uma Mahesh; Fallon, Padraic G; Premenko-Lanier, Mary; McKerrow, James H; McCune, Joseph M; Loke, P'ngPLoS pathogens2012e100288322927819
Pretreatment of Asian elephant (Elephas maximus) spermatozoa with cholesterol-loaded cyclodextrins and glycerol addition at 4ýýC improves cryosurvival.Kiso, Wendy K; Asano, Atsushi; Travis, Alexander J; Schmitt, Dennis L; Brown, Janine L; Pukazhenthi, Budhan SReproduction, fertility, and development20121134-4222954260
The enzymatic and metabolic capabilities of early life.Goldman, Aaron David; Baross, John A; Samudrala, RamPloS one2012e3991222970111
Understanding the relationship between brain gene expression and social behavior: lessons from the honey bee.Zayed, Amro; Robinson, Gene EAnnual review of genetics2012591-61522994354
The miRNA Regulation of Stem Cells.Huang, Xiao Albert; Lin, HaifanWiley interdisciplinary reviews. Membrane transport and signaling2012 Jan 183-9523024929
The genetic prehistory of southern Africa.Pickrell, Joseph K; Patterson, Nick; Barbieri, Chiara; Berthold, Falko; Gerlach, Linda; Guldemann, Tom; Kure, Blesswell; Mpoloka, Sununguko Wata; Nakagawa, Hirosi; Naumann, Christfried; Lipson, Mark; Loh, Po-Ru; Lachance, Joseph; Mountain, Joanna; BustamaNature communications2012114323072811
Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation.Birch, Elsa W; Ruggero, Nicholas A; Covert, Markus WPLoS computational biology2012e100274623093930
Recent Developments in Shape-Controlled Synthesis of Silver Nanocrystals.Xia, Xiaohu; Zeng, Jie; Zhang, Qiang; Moran, Christine H; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces201221647-2165623105955
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon.Broadhurst, Mara Jana; Ardeshir, Amir; Kanwar, Bittoo; Mirpuri, Julie; Gundra, Uma Mahesh; Leung, Jacqueline M; Wiens, Kirsten E; Vujkovic-Cvijin, Ivan; Kim, Charlie C; Yarovinsky, Felix; Lerche, Nicholas W; McCune, Joseph M; Loke, P'ngPLoS pathogens2012e100300023166490
Tuning promoter strength through RNA polymerase binding site design in Escherichia coli.Brewster, Robert C; Jones, Daniel L; Phillips, RobPLoS computational biology2012e100281123271961
How the fly balances its ability to combat different pathogens.Chambers, Moria C; Lightfield, Karla L; Schneider, David SPLoS pathogens2012e100297023271964
Listeria monocytogenes infection causes metabolic shifts in Drosophila melanogaster.Chambers, Moria C; Song, Kyung Han; Schneider, David SPloS one2012e5067923272066
A superposable silicon synapse with programmable reversal potential.Benjamin, Ben V; Arthur, John V; Gao, Peiran; Merolla, Paul; Boahen, KwabenaConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference2012771-423366006
Transductive neural decoding for unsorted neuronal spikes of rat hippocampus.Chen, Zhe; Kloosterman, Fabian; Layton, Stuart; Wilson, Matthew AConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20121310-323366139
A brain machine interface control algorithm designed from a feedback control perspective.Gilja, Vikash; Nuyujukian, Paul; Chestek, Cindy A; Cunningham, John P; Yu, Byron M; Fan, Joline M; Ryu, Stephen I; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20121318-2223366141
A framework for relating neural activity to freely moving behavior.Foster, Justin D; Nuyujukian, Paul; Freifeld, Oren; Ryu, Stephen I; Black, Michael J; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20122736-923366491
Beamforming approach to phase-amplitude modulation analysis of multi-channel EEG.Sampson, A L; Babadi, B; Prerau, M J; Mukamel, E A; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126731-423367474
A fast iterative greedy algorithm for MEG source localization.Obregon-Henao, G; Babadi, B; Lamus, C; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126748-5123367478
A spatially-regularized dynamic source localization algorithm for EEG.Pirondini, E; Babadi, B; Lamus, C; Brown, E N; Purdon, P LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20126752-523367479
The microRNA regulation of stem cells.Huang, Xiao Albert; Lin, HaifanWiley interdisciplinary reviews. Developmental biology2012 Jan-Feb83-9523801669
In vivo quantitative evaluation of the transport kinetics of gold nanocages in a lymphatic system by noninvasive photoacoustic tomography.Cai, Xin; Li, Weiyang; Kim, Chul-Hong; Yuan, Yuchen; Wang, Lihong V; Xia, YounanACS nano2011 Dec 279658-6722054348
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.Ram, Oren; Goren, Alon; Amit, Ido; Shoresh, Noam; Yosef, Nir; Ernst, Jason; Kellis, Manolis; Gymrek, Melissa; Issner, Robbyn; Coyne, Michael; Durham, Timothy; Zhang, Xiaolan; Donaghey, Julie; Epstein, Charles B; Regev, Aviv; Bernstein, Bradley ECell2011 Dec 231628-3922196736
Sustained axon regeneration induced by co-deletion of PTEN and SOCS3.Sun, Fang; Park, Kevin K; Belin, Stephane; Wang, Dongqing; Lu, Tao; Chen, Gang; Zhang, Kang; Yeung, Cecil; Feng, Guoping; Yankner, Bruce A; He, ZhigangNature2011 Dec 15372-522056987
CPG15 regulates synapse stability in the developing and adult brain.Fujino, Tadahiro; Leslie, Jennifer H; Eavri, Ronen; Chen, Jerry L; Lin, Walter C; Flanders, Genevieve H; Borok, Erzsebet; Horvath, Tamas L; Nedivi, EllyGenes & development2011 Dec 152674-8522190461
Hypoxia-induced neonatal seizures diminish silent synapses and long-term potentiation in hippocampal CA1 neurons.Zhou, Chengwen; Lippman, Jocelyn J Bell; Sun, Hongyu; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Dec 1418211-2222171027
Katanin contributes to interspecies spindle length scaling in Xenopus.Loughlin, Rose; Wilbur, Jeremy D; McNally, Francis J; Nedelec, Francois J; Heald, RebeccaCell2011 Dec 91397-40722153081
Adaptive decoding for brain-machine interfaces through Bayesian parameter updates.Li, Zheng; O'Doherty, Joseph E; Lebedev, Mikhail A; Nicolelis, Miguel A LNeural computation2011 Dec3162-20421919788
Strategies to discover regulatory circuits of the mammalian immune system.Amit, Ido; Regev, Aviv; Hacohen, NirNature reviews. Immunology2011 Dec873-8022094988
Alternatively activated macrophages produce catecholamines to sustain adaptive thermogenesis.Nguyen, Khoa D; Qiu, Yifu; Cui, Xiaojin; Goh, Y P Sharon; Mwangi, Julia; David, Tovo; Mukundan, Lata; Brombacher, Frank; Locksley, Richard M; Chawla, AjayNature2011 Dec 1104-822101429
Haplotype variation and genotype imputation in African populations.Huang, Lucy; Jakobsson, Mattias; Pemberton, Trevor J; Ibrahim, Muntaser; Nyambo, Thomas; Omar, Sabah; Pritchard, Jonathan K; Tishkoff, Sarah A; Rosenberg, Noah AGenetic epidemiology2011 Dec766-8022125220
Genomic rearrangement in three dimensions.Hastings, P J; Rosenberg, Susan MNature biotechnology2011 Dec1096-822158363
A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster.Yin, Hang; Sweeney, Sarah; Raha, Debasish; Snyder, Michael; Lin, HaifanPLoS genetics2011 Dece100238022194694
The Caenorhabditis elegans synthetic multivulva genes prevent ras pathway activation by tightly repressing global ectopic expression of lin-3 EGF.Saffer, Adam M; Kim, Dong Hyun; van Oudenaarden, Alexander; Horvitz, H RobertPLoS genetics2011 Dece100241822242000
Semiconductor nanowires: A platform for nanoscience and nanotechnology.Lieber, Charles MMRS bulletin / Materials Research Society2011 Dec 11052-106322707850
A Distributed Platform for Global-Scale Agent-Based Models of Disease Transmission.Parker, Jon; Epstein, Joshua MACM transactions on modeling and computer simulation : a publication of the Association for Computing Machinery2011 Dec224465120
A spatiotemporal dynamic distributed solution to the MEG inverse problem.Lamus, Camilo; Hamalainen, Matti S; Temereanca, Simona; Brown, Emery N; Purdon, Patrick LNeuroImage2011 Nov 3022155043
Abacavir increases platelet reactivity via competitive inhibition of soluble guanylyl cyclase.Baum, Paul D; Sullam, Paul M; Stoddart, Cheryl A; McCune, Joseph MAIDS (London, England)2011 Nov 282243-821941165
Mitotic chromosome size scaling in Xenopus.Kieserman, Esther K; Heald, RebeccaCell cycle (Georgetown, Tex.)2011 Nov 153863-7022071695
Systematic discovery of TLR signaling components delineates viral-sensing circuits.Chevrier, Nicolas; Mertins, Philipp; Artyomov, Maxim N; Shalek, Alex K; Iannacone, Matteo; Ciaccio, Mark F; Gat-Viks, Irit; Tonti, Elena; DeGrace, Marciela M; Clauser, Karl R; Garber, Manuel; Eisenhaure, Thomas M; Yosef, Nir; Robinson, Jacob; Sutton, Amy;Cell2011 Nov 11853-6722078882
Active tactile exploration using a brain-machine-brain interface.O'Doherty, Joseph E; Lebedev, Mikhail A; Ifft, Peter J; Zhuang, Katie Z; Shokur, Solaiman; Bleuler, Hannes; Nicolelis, Miguel A LNature2011 Nov 10228-3121976021
Multiplexed quantification of nucleic acids with large dynamic range using multivolume digital RT-PCR on a rotational SlipChip tested with HIV and hepatitis C viral load.Shen, Feng; Sun, Bing; Kreutz, Jason E; Davydova, Elena K; Du, Wenbin; Reddy, Poluru L; Joseph, Loren J; Ismagilov, Rustem FJournal of the American Chemical Society2011 Nov 917705-1221995644
Large-scale automated histology in the pursuit of connectomes.Kleinfeld, David; Bharioke, Arjun; Blinder, Pablo; Bock, Davi D; Briggman, Kevin L; Chklovskii, Dmitri B; Denk, Winfried; Helmstaedter, Moritz; Kaufhold, John P; Lee, Wei-Chung Allen; Meyer, Hanno S; Micheva, Kristina D; Oberlaender, Marcel; Prohaska, SteThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Nov 916125-3822072665
In situ genetic correction of the sickle cell anemia mutation in human induced pluripotent stem cells using engineered zinc finger nucleases.Sebastiano, Vittorio; Maeder, Morgan L; Angstman, James F; Haddad, Bahareh; Khayter, Cyd; Yeo, Dana T; Goodwin, Mathew J; Hawkins, John S; Ramirez, Cherie L; Batista, Luis F Z; Artandi, Steven E; Wernig, Marius; Joung, J KeithStem cells (Dayton, Ohio)2011 Nov1717-2621898685
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization.Tsankov, Alex; Yanagisawa, Yoshimi; Rhind, Nicholas; Regev, Aviv; Rando, Oliver JGenome research2011 Nov1851-6221914852
Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.Wang, Qinghua; Zhuravleva, Anastasia; Gierasch, Lila MBiochemistry2011 Nov 19225-3621942871
Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states.Chandrasekaran, Sriram; Ament, Seth A; Eddy, James A; Rodriguez-Zas, Sandra L; Schatz, Bruce R; Price, Nathan D; Robinson, Gene EProceedings of the National Academy of Sciences of the United States of America2011 Nov 118020-521960440
Theoretical design and analysis of multivolume digital assays with wide dynamic range validated experimentally with microfluidic digital PCR.Kreutz, Jason E; Munson, Todd; Huynh, Toan; Shen, Feng; Du, Wenbin; Ismagilov, Rustem FAnalytical chemistry2011 Nov 18158-6821981344
Macrophage-mediated inflammation in metabolic disease.Chawla, Ajay; Nguyen, Khoa D; Goh, Y P SharonNature reviews. Immunology2011 Nov738-4921984069
Characterization of genetic variation and natural selection at the arylamine N-acetyltransferase genes in global human populations.Mortensen, Holly M; Froment, Alain; Lema, Godfrey; Bodo, Jean-Marie; Ibrahim, Muntaser; Nyambo, Thomas B; Omar, Sabah A; Tishkoff, Sarah APharmacogenomics2011 Nov1545-5821995608
Loop nucleotides control primary and mature miRNA function in target recognition and repression.Yue, Si-Biao; Trujillo, Robin Deis; Tang, Yujie; O'Gorman, William E; Chen, Chang-ZhengRNA biology2011 Nov-Dec1115-2322142974
Gold nanocages: from synthesis to theranostic applications.Xia, Younan; Li, Weiyang; Cobley, Claire M; Chen, Jingyi; Xia, Xiaohu; Zhang, Qiang; Yang, Miaoxin; Cho, Eun Chul; Brown, Paige KAccounts of chemical research2011 Oct 18914-2421528889
Molecular cloaking of H2A.Z on mortal DNA chromosomes during nonrandom segregation.Huh, Yang Hoon; Sherley, James LStem cells (Dayton, Ohio)2011 Oct1620-721905168
Methylphenidate actively induces emergence from general anesthesia.Solt, Ken; Cotten, Joseph F; Cimenser, Aylin; Wong, Kin F K; Chemali, Jessica J; Brown, Emery NAnesthesiology2011 Oct791-80321934407
Engineering designer nucleases with customized cleavage specificities.Sander, Jeffry D; Maeder, Morgan L; Joung, J KeithCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]2011 OctUnit12.1321987054
Fitness landscape of antibiotic tolerance in Pseudomonas aeruginosa biofilms.Amini, Sasan; Hottes, Alison K; Smith, Lincoln E; Tavazoie, SaeedPLoS pathogens2011 Octe100229822028649
Interstitial contacts in an RNA-dependent RNA polymerase lattice.Tellez, Andres B; Wang, Jing; Tanner, Elizabeth J; Spagnolo, Jeannie F; Kirkegaard, Karla; Bullitt, EstherJournal of molecular biology2011 Sep 30737-5021839092
Microbiology. Antibiotic resistance, not shaken or stirred.Frisch, Ryan L; Rosenberg, Susan MScience (New York, N.Y.)2011 Sep 231713-421940884
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.Cabili, Moran N; Trapnell, Cole; Goff, Loyal; Koziol, Magdalena; Tazon-Vega, Barbara; Regev, Aviv; Rinn, John LGenes & development2011 Sep 151915-2721890647
Galphas-biased beta2-adrenergic receptor signaling from restoring synchronous contraction in the failing heart.Chakir, Khalid; Depry, Charlene; Dimaano, Veronica L; Zhu, Wei-Zhong; Vanderheyden, Marc; Bartunek, Jozef; Abraham, Theodore P; Tomaselli, Gordon F; Liu, Shu-bai; Xiang, Yang K; Zhang, Manling; Takimoto, Eiki; Dulin, Nickolai; Xiao, Rui Ping; Zhang, Jin; Science translational medicine2011 Sep 14100ra8821918105
Functional characterization of bacterial sRNAs using a network biology approach.Modi, Sheetal R; Camacho, Diogo M; Kohanski, Michael A; Walker, Graham C; Collins, James JProceedings of the National Academy of Sciences of the United States of America2011 Sep 1315522-721876160
Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection.Pattanayak, Vikram; Ramirez, Cherie L; Joung, J Keith; Liu, David RNature methods2011 Sep765-7021822273
MicroRNAs can generate thresholds in target gene expression.Mukherji, Shankar; Ebert, Margaret S; Zheng, Grace X Y; Tsang, John S; Sharp, Phillip A; van Oudenaarden, AlexanderNature genetics2011 Sep854-921857679
Peroxisome proliferation-associated control of reactive oxygen species sets melanocortin tone and feeding in diet-induced obesity.Diano, Sabrina; Liu, Zhong-Wu; Jeong, Jin Kwon; Dietrich, Marcelo O; Ruan, Hai-Bin; Kim, Esther; Suyama, Shigetomo; Kelly, Kaitlin; Gyengesi, Erika; Arbiser, Jack L; Belsham, Denise D; Sarruf, David A; Schwartz, Michael W; Bennett, Anton M; Shanabrough, MNature medicine2011 Sep1121-721873987
The toxin and antidote puzzle: new ways to control insect pest populations through manipulating inheritance.Marshall, John MBioengineered bugs2011 Sep-Oct235-4021876382
Gold nanocages as contrast agents for photoacoustic imaging.Li, Weiyang; Brown, Paige K; Wang, Lihong V; Xia, YounanContrast media & molecular imaging2011 Sep-Oct370-722025337
A Three-Channel Spectrometer for Wide-Field Imaging of Anisotropic Plasmonic Nanoparticles.Sweeney, Christina M; Nehl, Colleen L; Hasan, Warefta; Liang, Taiyang; Eckermann, Amanda; Meade, Thomas J; Odom, Teri WThe journal of physical chemistry. C, Nanomaterials and interfaces2011 Aug 1815933-1593721927639
In situ structural characterization of a recombinant protein in native Escherichia coli membranes with solid-state magic-angle-spinning NMR.Fu, Riqiang; Wang, Xingsheng; Li, Conggang; Santiago-Miranda, Adriana N; Pielak, Gary J; Tian, FangJournal of the American Chemical Society2011 Aug 1712370-321774553
Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli.Shee, Chandan; Gibson, Janet L; Darrow, Michele C; Gonzalez, Caleb; Rosenberg, Susan MProceedings of the National Academy of Sciences of the United States of America2011 Aug 1613659-6421808005
Comparison and calibration of different reporters for quantitative analysis of gene expression.Garcia, Hernan G; Lee, Heun Jin; Boedicker, James Q; Phillips, RobBiophysical journal2011 Aug 3535-4421806921
Symmetries in stimulus statistics shape the form of visual motion estimators.Fitzgerald, James E; Katsov, Alexander Y; Clandinin, Thomas R; Schnitzer, Mark JProceedings of the National Academy of Sciences of the United States of America2011 Aug 212909-1421768376
Zinc-finger nucleases for somatic gene therapy: the next frontier.Rahman, Shamim H; Maeder, Morgan L; Joung, J Keith; Cathomen, ToniHuman gene therapy2011 Aug925-3321631241
Integration of cell-free protein coexpression with an enzyme-linked immunosorbent assay enables rapid analysis of protein-protein interactions directly from DNA.Layton, Curtis J; Hellinga, Homme WProtein science : a publication of the Protein Society2011 Aug1432-821674663
Noninvasive photoacoustic microscopy of living cells in two and three dimensions through enhancement by a metabolite dye.Zhang, Yu; Cai, Xin; Wang, Yu; Zhang, Chi; Li, Li; Choi, Sung-Wook; Wang, Lihong V; Xia, YounanAngewandte Chemie (International ed. in English)2011 Aug 17359-6321681876
Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex.Chestek, Cynthia A; Gilja, Vikash; Nuyujukian, Paul; Foster, Justin D; Fan, Joline M; Kaufman, Matthew T; Churchland, Mark M; Rivera-Alvidrez, Zuley; Cunningham, John P; Ryu, Stephen I; Shenoy, Krishna VJournal of neural engineering2011 Aug04500521775782
Targeted gene disruption in somatic zebrafish cells using engineered TALENs.Sander, Jeffry D; Cade, Lindsay; Khayter, Cyd; Reyon, Deepak; Peterson, Randall T; Joung, J Keith; Yeh, Jing-Ruey JNature biotechnology2011 Aug697-821822241
Nanoparticle SERS substrates with 3D Raman-active volumes.Stoerzinger, Kelsey A; Lin, Julia Y; Odom, Teri WChemical science (Royal Society of Chemistry : 2010)2011 Aug 11435-143923997929
Microbial genomics and infectious diseases.Relman, David AThe New England journal of medicine2011 Jul 28347-5721793746
Quantitative dissection of the simple repression input-output function.Garcia, Hernan G; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2011 Jul 1912173-821730194
More effective nanomedicines through particle design.Wang, Jin; Byrne, James D; Napier, Mary E; DeSimone, Joseph MSmall (Weinheim an der Bergstrasse, Germany)2011 Jul 181919-3121695781
Restriction of transient receptor potential vanilloid-1 to the peptidergic subset of primary afferent neurons follows its developmental downregulation in nonpeptidergic neurons.Cavanaugh, Daniel J; Chesler, Alexander T; Braz, Joao M; Shah, Nirao M; Julius, David; Basbaum, Allan IThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Jul 1310119-2721752988
Building enhancers from the ground up: a synthetic biology approach.Amit, Roee; Garcia, Hernan G; Phillips, Rob; Fraser, Scott ECell2011 Jul 8105-1821729783
Challenges and opportunities for next-generation intracortically based neural prostheses.Gilja, Vikash; Chestek, Cindy A; Diester, Ilka; Henderson, Jaimie M; Deisseroth, Karl; Shenoy, Krishna VIEEE transactions on bio-medical engineering2011 Jul1891-921257365
Assessment of cardio-respiratory interactions in preterm infants by bivariate autoregressive modeling and surrogate data analysis.Indic, Premananda; Bloch-Salisbury, Elisabeth; Bednarek, Frank; Brown, Emery N; Paydarfar, David; Barbieri, RiccardoEarly human development2011 Jul477-8721511413
Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, Manfred G; Haas, Brian J; Yassour, Moran; Levin, Joshua Z; Thompson, Dawn A; Amit, Ido; Adiconis, Xian; Fan, Lin; Raychowdhury, Raktima; Zeng, Qiandong; Chen, Zehua; Mauceli, Evan; Hacohen, Nir; Gnirke, Andreas; Rhind, Nicholas; di Palma, FederiNature biotechnology2011 Jul644-5221572440
High-fat feeding promotes obesity via insulin receptor/PI3K-dependent inhibition of SF-1 VMH neurons.Klockener, Tim; Hess, Simon; Belgardt, Bengt F; Paeger, Lars; Verhagen, Linda A W; Husch, Andreas; Sohn, Jong-Woo; Hampel, Brigitte; Dhillon, Harveen; Zigman, Jeffrey M; Lowell, Bradford B; Williams, Kevin W; Elmquist, Joel K; Horvath, Tamas L; KloppenburNature neuroscience2011 Jul911-821642975
Neuroblast migration along the anteroposterior axis of C. elegans is controlled by opposing gradients of Wnts and a secreted Frizzled-related protein.Harterink, Martin; Kim, Dong Hyun; Middelkoop, Teije C; Doan, Thang Dinh; van Oudenaarden, Alexander; Korswagen, Hendrik CDevelopment (Cambridge, England)2011 Jul2915-2421653614
Physical Module Networks: an integrative approach for reconstructing transcription regulation.Novershtern, Noa; Regev, Aviv; Friedman, NirBioinformatics (Oxford, England)2011 Jul 1i177-8521685068
Probing individual environmental bacteria for viruses by using microfluidic digital PCR.Tadmor, Arbel D; Ottesen, Elizabeth A; Leadbetter, Jared R; Phillips, RobScience (New York, N.Y.)2011 Jul 158-6221719670
The effect of mutations on the alloreactive T cell receptor/peptide-MHC interface structure: a molecular dynamics study.Wolfson, Mikhail Y; Nam, Kwangho; Chakraborty, Arup KThe journal of physical chemistry. B2011 Jun 308317-2721651302
Defining the computational structure of the motion detector in Drosophila.Clark, Damon A; Bursztyn, Limor; Horowitz, Mark A; Schnitzer, Mark J; Clandinin, Thomas RNeuron2011 Jun 231165-7721689602
The visual impact of gossip.Anderson, Eric; Siegel, Erika H; Bliss-Moreau, Eliza; Barrett, Lisa FeldmanScience (New York, N.Y.)2011 Jun 171446-821596956
A hierarchical Bayesian approach for learning sparse spatio-temporal decompositions of multichannel EEG.Wu, Wei; Chen, Zhe; Gao, Shangkai; Brown, Emery NNeuroImage2011 Jun 151929-4521420499
Involvement of adenosine A2A receptors in engulfment-dependent apoptotic cell suppression of inflammation.Koroskenyi, Krisztina; Duro, Edina; Pallai, Anna; Sarang, Zsolt; Kloor, Doris; Ucker, David S; Beceiro, Susana; Castrillo, Antonio; Chawla, Ajay; Ledent, Catherine A; Fesus, Laszlo; Szondy, ZsuzsaJournal of immunology (Baltimore, Md. : 1950)2011 Jun 157144-5521593381
Breaking free of sample size dogma to perform innovative translational research.Bacchetti, Peter; Deeks, Steven G; McCune, Joseph MScience translational medicine2011 Jun 1587ps2421677197
Nicotine decreases food intake through activation of POMC neurons.Mineur, Yann S; Abizaid, Alfonso; Rao, Yan; Salas, Ramiro; DiLeone, Ralph J; Gundisch, Daniela; Diano, Sabrina; De Biasi, Mariella; Horvath, Tamas L; Gao, Xiao-Bing; Picciotto, Marina RScience (New York, N.Y.)2011 Jun 101330-221659607
The human brain in a dish: the promise of iPSC-derived neurons.Dolmetsch, Ricardo; Geschwind, Daniel HCell2011 Jun 10831-421663789
Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations.Ko, Wen-Ya; Kaercher, Kristin A; Giombini, Emanuela; Marcatili, Paolo; Froment, Alain; Ibrahim, Muntaser; Lema, Godfrey; Nyambo, Thomas B; Omar, Sabah A; Wambebe, Charles; Ranciaro, Alessia; Hirbo, Jibril B; Tishkoff, Sarah AAmerican journal of human genetics2011 Jun 10741-5421664997
Controlling the synthesis and assembly of silver nanostructures for plasmonic applications.Rycenga, Matthew; Cobley, Claire M; Zeng, Jie; Li, Weiyang; Moran, Christine H; Zhang, Qiang; Qin, Dong; Xia, YounanChemical reviews2011 Jun 83669-71221395318
Reconstitution of contractile actomyosin bundles.Thoresen, Todd; Lenz, Martin; Gardel, Margaret LBiophysical journal2011 Jun 82698-70521641315
Generation of hot spots with silver nanocubes for single-molecule detection by surface-enhanced Raman scattering.Rycenga, Matthew; Xia, Xiaohu; Moran, Christine H; Zhou, Fei; Qin, Dong; Li, Zhi-Yuan; Xia, YounanAngewandte Chemie (International ed. in English)2011 Jun 65473-721542081
Age of diagnosis for autism: individual and community factors across 10 birth cohorts.Fountain, Christine; King, Marissa D; Bearman, Peter SJournal of epidemiology and community health2011 Jun503-1020974836
A point process model for auditory neurons considering both their intrinsic dynamics and the spectrotemporal properties of an extrinsic signal.Plourde, Eric; Delgutte, Bertrand; Brown, Emery NIEEE transactions on bio-medical engineering2011 Jun1507-1021317068
Neuropeptide Y-like signalling and nutritionally mediated gene expression and behaviour in the honey bee.Ament, S A; Velarde, R A; Kolodkin, M H; Moyse, D; Robinson, G EInsect molecular biology2011 Jun335-4521349120
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.Curtin, Shaun J; Zhang, Feng; Sander, Jeffry D; Haun, William J; Starker, Colby; Baltes, Nicholas J; Reyon, Deepak; Dahlborg, Elizabeth J; Goodwin, Mathew J; Coffman, Andrew P; Dobbs, Drena; Joung, J Keith; Voytas, Daniel F; Stupar, Robert MPlant physiology2011 Jun466-7321464476
Interactions between Cdx genes and retinoic acid modulate early cardiogenesis.Lengerke, Claudia; Wingert, Rebecca; Beeretz, Michael; Grauer, Matthias; Schmidt, Anne G; Konantz, Martina; Daley, George Q; Davidson, Alan JDevelopmental biology2011 Jun 1134-4221466798
Photon counting, censor corrections, and lifetime imaging for improved detection in two-photon microscopy.Driscoll, Jonathan D; Shih, Andy Y; Iyengar, Satish; Field, Jeffrey J; White, G Allen; Squier, Jeffrey A; Cauwenberghs, Gert; Kleinfeld, DavidJournal of neurophysiology2011 Jun3106-1321471395
The effect of sedimentation and diffusion on cellular uptake of gold nanoparticles.Cho, Eun Chul; Zhang, Qiang; Xia, YounanNature nanotechnology2011 Jun385-9121516092
Macromolecular crowding fails to fold a globular protein in cells.Schlesinger, Alexander P; Wang, Yaqiang; Tadeo, Xavier; Millet, Oscar; Pielak, Gary JJournal of the American Chemical Society2011 Jun 18082-521534566
Elastic energy of polyhedral bilayer vesicles.Haselwandter, Christoph A; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2011 Jun06190121797397
Prolonged oxaliplatin exposure alters intracellular calcium signaling: a new mechanism to explain oxaliplatin-associated peripheral neuropathy.Schulze, Christin; McGowan, Margit; Jordt, Sven-Eric; Ehrlich, Barbara EClinical colorectal cancer2011 Jun126-3321859566
STATE-SPACE SOLUTIONS TO THE DYNAMIC MAGNETOENCEPHALOGRAPHY INVERSE PROBLEM USING HIGH PERFORMANCE COMPUTING.Long, Christopher J; Purdon, Patrick L; Temereanca, Simona; Desai, Neil U; Hamalainen, Matti S; Brown, Emery NThe annals of applied statistics2011 Jun 11207-122822081780
Measurement of absolute T cell receptor rearrangement diversity.Baum, Paul D; Young, Jennifer J; McCune, Joseph MJournal of immunological methods2011 May 3145-5321385585
Tracking brain states under general anesthesia by using global coherence analysis.Cimenser, Aylin; Purdon, Patrick L; Pierce, Eric T; Walsh, John L; Salazar-Gomez, Andres F; Harrell, Priscilla G; Tavares-Stoeckel, Casie; Habeeb, Kathleen; Brown, Emery NProceedings of the National Academy of Sciences of the United States of America2011 May 248832-721555565
Comparative functional genomics of the fission yeasts.Rhind, Nicholas; Chen, Zehua; Yassour, Moran; Thompson, Dawn A; Haas, Brian J; Habib, Naomi; Wapinski, Ilan; Roy, Sushmita; Lin, Michael F; Heiman, David I; Young, Sarah K; Furuya, Kanji; Guo, Yabin; Pidoux, Alison; Chen, Huei Mei; Robbertse, Barbara; GolScience (New York, N.Y.)2011 May 20930-621511999
Fluctuating and sensory-induced vasodynamics in rodent cortex extend arteriole capacity.Drew, Patrick J; Shih, Andy Y; Kleinfeld, DavidProceedings of the National Academy of Sciences of the United States of America2011 May 178473-821536897
Numb links extracellular cues to intracellular polarity machinery to promote chemotaxis.Zhou, Pengcheng; Alfaro, Jose; Chang, Eun Hyuk; Zhao, Xuesong; Porcionatto, Marimelia; Segal, Rosalind ADevelopmental cell2011 May 17610-2221571219
Metabolite-enabled eradication of bacterial persisters by aminoglycosides.Allison, Kyle R; Brynildsen, Mark P; Collins, James JNature2011 May 12216-2021562562
Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells.Newman, Robert H; Fosbrink, Matthew D; Zhang, JinChemical reviews2011 May 113614-6621456512
Differential hemodynamic response in affective circuitry with aging: an FMRI study of novelty, valence, and arousal.Moriguchi, Yoshiya; Negreira, Alyson; Weierich, Mariann; Dautoff, Rebecca; Dickerson, Bradford C; Wright, Christopher I; Barrett, Lisa FeldmanJournal of cognitive neuroscience2011 May1027-4120521849
Emotional granularity and borderline personality disorder.Suvak, Michael K; Litz, Brett T; Sloan, Denise M; Zanarini, Mary C; Barrett, Lisa Feldman; Hofmann, Stefan GJournal of abnormal psychology2011 May414-2621171723
Space coding by gamma oscillations in the barn owl optic tectum.Sridharan, Devarajan; Boahen, Kwabena; Knudsen, Eric IJournal of neurophysiology2011 May2005-1721325681
Single-neuron dynamics in human focal epilepsy.Truccolo, Wilson; Donoghue, Jacob A; Hochberg, Leigh R; Eskandar, Emad N; Madsen, Joseph R; Anderson, William S; Brown, Emery N; Halgren, Eric; Cash, Sydney SNature neuroscience2011 May635-4121441925
PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition.Liu, Li; Qi, Hongying; Wang, Jianquan; Lin, HaifanDevelopment (Cambridge, England)2011 May1863-7321447556
MicroRNA programs in normal and aberrant stem and progenitor cells.Arnold, Christopher P; Tan, Ruoying; Zhou, Baiyu; Yue, Si-Biao; Schaffert, Steven; Biggs, Joseph R; Doyonnas, Regis; Lo, Miao-Chia; Perry, John M; Renault, Valerie M; Sacco, Alessandra; Somervaille, Tim; Viatour, Patrick; Brunet, Anne; Cleary, Michael L; Genome research2011 May798-81021451113
Digital isothermal quantification of nucleic acids via simultaneous chemical initiation of recombinase polymerase amplification reactions on SlipChip.Shen, Feng; Davydova, Elena K; Du, Wenbin; Kreutz, Jason E; Piepenburg, Olaf; Ismagilov, Rustem FAnalytical chemistry2011 May 13533-4021476587
Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer.Steine, Eveline J; Ehrich, Mathias; Bell, George W; Raj, Arjun; Reddy, Seshamma; van Oudenaarden, Alexander; Jaenisch, Rudolf; Linhart, Heinz GThe Journal of clinical investigation2011 May1748-5221490393
Inverse Medea as a novel gene drive system for local population replacement: a theoretical analysis.Marshall, John M; Hay, Bruce AThe Journal of heredity2011 May-Jun336-4121493596
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.Rabani, Michal; Levin, Joshua Z; Fan, Lin; Adiconis, Xian; Raychowdhury, Raktima; Garber, Manuel; Gnirke, Andreas; Nusbaum, Chad; Hacohen, Nir; Friedman, Nir; Amit, Ido; Regev, AvivNature biotechnology2011 May436-4221516085
Insulin-like growth factor 1-mediated hyperthermia involves anterior hypothalamic insulin receptors.Sanchez-Alavez, Manuel; Osborn, Olivia; Tabarean, Iustin V; Holmberg, Kristina H; Eberwine, James; Kahn, C Ronald; Bartfai, TamasThe Journal of biological chemistry2011 Apr 2914983-9021330367
Luminescent kinase activity biosensors based on a versatile bimolecular switch.Herbst, Katie J; Allen, Michael D; Zhang, JinJournal of the American Chemical Society2011 Apr 205676-921438554
Dynamic and structural signatures of lamellar actomyosin force generation.Aratyn-Schaus, Yvonne; Oakes, Patrick W; Gardel, Margaret LMolecular biology of the cell2011 Apr 151330-921307339
Surface adsorbate fluctuations and noise in nanoelectromechanical systems.Yang, Y T; Callegari, C; Feng, X L; Roukes, M LNano letters2011 Apr 131753-921388120
Hepatic gene expression profiling of 5'-AMP-induced hypometabolism in mice.Zhao, Zhaoyang; Miki, Takao; Van Oort-Jansen, Anita; Matsumoto, Tomoko; Loose, David S; Lee, Cheng ChiPhysiological genomics2011 Apr 12325-4521224422
Eosinophils sustain adipose alternatively activated macrophages associated with glucose homeostasis.Wu, Davina; Molofsky, Ari B; Liang, Hong-Erh; Ricardo-Gonzalez, Roberto R; Jouihan, Hani A; Bando, Jennifer K; Chawla, Ajay; Locksley, Richard MScience (New York, N.Y.)2011 Apr 8243-721436399
A new theranostic system based on gold nanocages and phase-change materials with unique features for photoacoustic imaging and controlled release.Moon, Geon Dae; Choi, Sung-Wook; Cai, Xin; Li, Weiyang; Cho, Eun Chul; Jeong, Unyong; Wang, Lihong V; Xia, YounanJournal of the American Chemical Society2011 Apr 64762-521401092
Older and wiser? An affective science perspective on age-related challenges in financial decision making.Weierich, Mariann R; Kensinger, Elizabeth A; Munnell, Alicia H; Sass, Steven A; Dickerson, Brad C; Wright, Christopher I; Barrett, Lisa FeldmanSocial cognitive and affective neuroscience2011 Apr195-20620587596
Statistical inference for assessing functional connectivity of neuronal ensembles with sparse spiking data.Chen, Zhe; Putrino, David F; Ghosh, Soumya; Barbieri, Riccardo; Brown, Emery NIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2011 Apr121-3520937583
A closed-loop human simulator for investigating the role of feedback control in brain-machine interfaces.Cunningham, John P; Nuyujukian, Paul; Gilja, Vikash; Chestek, Cindy A; Ryu, Stephen I; Shenoy, Krishna VJournal of neurophysiology2011 Apr1932-4920943945
Medea selfish genetic elements as tools for altering traits of wild populations: a theoretical analysis.Ward, Catherine M; Su, Jessica T; Huang, Yunxin; Lloyd, Alun L; Gould, Fred; Hay, Bruce AEvolution; international journal of organic evolution2011 Apr1149-6221062278
Design, construction, and validation of a modular library of sequence diversity standards for polymerase chain reaction.Baum, Paul D; Young, Jennifer J; Zhang, Qianjun; Kasakow, Zeljka; McCune, Joseph MAnalytical biochemistry2011 Apr 1106-1521111699
Grounding emotion in situated conceptualization.Wilson-Mendenhall, Christine D; Barrett, Lisa Feldman; Simmons, W Kyle; Barsalou, Lawrence WNeuropsychologia2011 Apr1105-2721192959
Gold nanocages covered with thermally-responsive polymers for controlled release by high-intensity focused ultrasound.Li, Weiyang; Cai, Xin; Kim, Chulhong; Sun, Guorong; Zhang, Yu; Deng, Rui; Yang, Miaoxin; Chen, Jingyi; Achilefu, Samuel; Wang, Lihong V; Xia, YounanNanoscale2011 Apr1724-3021321760
Development of later life spontaneous seizures in a rodent model of hypoxia-induced neonatal seizures.Rakhade, Sanjay N; Klein, Peter M; Huynh, Thanthao; Hilario-Gomez, Cristina; Kosaras, Bela; Rotenberg, Alexander; Jensen, Frances EEpilepsia2011 Apr753-6521366558
Drug tolerance in replicating mycobacteria mediated by a macrophage-induced efflux mechanism.Adams, Kristin N; Takaki, Kevin; Connolly, Lynn E; Wiedenhoft, Heather; Winglee, Kathryn; Humbert, Olivier; Edelstein, Paul H; Cosma, Christine L; Ramakrishnan, LalitaCell2011 Apr 139-5321376383
A miniaturized technique for assessing protein thermodynamics and function using fast determination of quantitative cysteine reactivity.Isom, Daniel G; Marguet, Philippe R; Oas, Terrence G; Hellinga, Homme WProteins2011 Apr1034-4721387407
A randomized, controlled trial of raltegravir intensification in antiretroviral-treated, HIV-infected patients with a suboptimal CD4+ T cell response.Hatano, Hiroyu; Hayes, Timothy L; Dahl, Viktor; Sinclair, Elizabeth; Lee, Tzong-Hae; Hoh, Rebecca; Lampiris, Harry; Hunt, Peter W; Palmer, Sarah; McCune, Joseph M; Martin, Jeffrey N; Busch, Michael P; Shacklett, Barbara L; Deeks, Steven GThe Journal of infectious diseases2011 Apr 1960-821402547
Comparative advantages of mechanical biosensors.Arlett, J L; Myers, E B; Roukes, M LNature nanotechnology2011 Apr203-1521441911
Validating transcripts with probes and imaging technology.Itzkovitz, Shalev; van Oudenaarden, AlexanderNature methods2011 AprS12-921451512
Socioeconomic Status and the Increased Prevalence of Autism in California.King, Marissa D; Bearman, Peter SAmerican sociological review2011 Apr 1320-34621547238
Trpv1 reporter mice reveal highly restricted brain distribution and functional expression in arteriolar smooth muscle cells.Cavanaugh, Daniel J; Chesler, Alexander T; Jackson, Alexander C; Sigal, Yaron M; Yamanaka, Hiroki; Grant, Rebecca; O'Donnell, Dajan; Nicoll, Roger A; Shah, Nirao M; Julius, David; Basbaum, Allan IThe Journal of neuroscience : the official journal of the Society for Neuroscience2011 Mar 305067-7721451044
Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations.Gonder, Mary Katherine; Locatelli, Sabrina; Ghobrial, Lora; Mitchell, Matthew W; Kujawski, Joseph T; Lankester, Felix J; Stewart, Caro-Beth; Tishkoff, Sarah AProceedings of the National Academy of Sciences of the United States of America2011 Mar 224766-7121368170
Cell-ECM traction force modulates endogenous tension at cell-cell contacts.Maruthamuthu, Venkat; Sabass, Benedikt; Schwarz, Ulrich S; Gardel, Margaret LProceedings of the National Academy of Sciences of the United States of America2011 Mar 224708-1321383129
Impulse control: temporal dynamics in gene transcription.Yosef, Nir; Regev, AvivCell2011 Mar 18886-9621414481
Cellular decision making and biological noise: from microbes to mammals.Balazsi, Gabor; van Oudenaarden, Alexander; Collins, James JCell2011 Mar 18910-2521414483
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.Willner, Dana; Furlan, Mike; Schmieder, Robert; Grasis, Juris A; Pride, David T; Relman, David A; Angly, Florent E; McDole, Tracey; Mariella Jr, Ray P; Rohwer, Forest; Haynes, MatthewProceedings of the National Academy of Sciences of the United States of America2011 Mar 154547-5320547834
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation.Dethlefsen, Les; Relman, David AProceedings of the National Academy of Sciences of the United States of America2011 Mar 154554-6120847294
Sustained activation of nuclear erythroid 2-related factor 2/antioxidant response element signaling promotes reductive stress in the human mutant protein aggregation cardiomyopathy in mice.Rajasekaran, Namakkal Soorappan; Varadharaj, Saradhadevi; Khanderao, Gayatri D; Davidson, Christopher J; Kannan, Sankaranarayanan; Firpo, Matthew A; Zweier, Jay L; Benjamin, Ivor JAntioxidants & redox signaling2011 Mar 15957-7121126175
Using induced pluripotent stem cells to investigate cardiac phenotypes in Timothy syndrome.Yazawa, Masayuki; Hsueh, Brian; Jia, Xiaolin; Pasca, Anca M; Bernstein, Jonathan A; Hallmayer, Joachim; Dolmetsch, Ricardo ENature2011 Mar 10230-421307850
Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons.Buckley, Peter T; Lee, Miler T; Sul, Jai-Yoon; Miyashiro, Kevin Y; Bell, Thomas J; Fisher, Stephen A; Kim, Junhyong; Eberwine, JamesNeuron2011 Mar 10877-8421382548
Dodging drug-resistant cancer with diamonds.Merkel, Timothy J; DeSimone, Joseph MScience translational medicine2011 Mar 973ps821389261
Caenorhabditis elegans aristaless/Arx gene alr-1 restricts variable gene expression.Topalidou, Irini; van Oudenaarden, Alexander; Chalfie, MartinProceedings of the National Academy of Sciences of the United States of America2011 Mar 84063-821368126
In vivo imaging of myelin in the vertebrate central nervous system using third harmonic generation microscopy.Farrar, Matthew J; Wise, Frank W; Fetcho, Joseph R; Schaffer, Chris BBiophysical journal2011 Mar 21362-7121354410
An enzyme-sensitive probe for photoacoustic imaging and fluorescence detection of protease activity.Xia, Xiaohu; Yang, Miaoxin; Oetjen, L Kyle; Zhang, Yu; Li, Qingge; Chen, Jingyi; Xia, YounanNanoscale2011 Mar950-321225037
HIV-specific CD4+ T cells may contribute to viral persistence in HIV controllers.Hunt, Peter W; Hatano, Hiroyu; Sinclair, Elizabeth; Lee, Tzong-Hae; Busch, Michael P; Martin, Jeffrey N; McCune, Joseph M; Deeks, Steven GClinical infectious diseases : an official publication of the Infectious Diseases Society of America2011 Mar 1681-721245154
An optogenetic toolbox designed for primates.Diester, Ilka; Kaufman, Matthew T; Mogri, Murtaza; Pashaie, Ramin; Goo, Werapong; Yizhar, Ofer; Ramakrishnan, Charu; Deisseroth, Karl; Shenoy, Krishna VNature neuroscience2011 Mar387-9721278729
High-throughput single-molecule optofluidic analysis.Kim, Soohong; Streets, Aaron M; Lin, Ron R; Quake, Stephen R; Weiss, Shimon; Majumdar, Devdoot SNature methods2011 Mar242-521297618
Effect of promoter architecture on the cell-to-cell variability in gene expression.Sanchez, Alvaro; Garcia, Hernan G; Jones, Daniel; Phillips, Rob; Kondev, JanePLoS computational biology2011 Mare100110021390269
Human leg model predicts ankle muscle-tendon morphology, state, roles and energetics in walking.Krishnaswamy, Pavitra; Brown, Emery N; Herr, Hugh MPLoS computational biology2011 Mare100110721445231
A Granger causality measure for point process models of ensemble neural spiking activity.Kim, Sanggyun; Putrino, David; Ghosh, Soumya; Brown, Emery NPLoS computational biology2011 Mare100111021455283
A versatile in vivo system for directed dissection of gene expression patterns.Gohl, Daryl M; Silies, Marion A; Gao, Xiaojing J; Bhalerao, Sheetal; Luongo, Francisco J; Lin, Chun-Chieh; Potter, Christopher J; Clandinin, Thomas RNature methods2011 Mar231-721473015
Direct activation of Epac by sulfonylurea is isoform selective.Herbst, Katie J; Coltharp, Carla; Amzel, L Mario; Zhang, JinChemistry & biology2011 Feb 25243-5121338921
Excitatory projection neuron subtypes control the distribution of local inhibitory interneurons in the cerebral cortex.Lodato, Simona; Rouaux, Caroline; Quast, Kathleen B; Jantrachotechatchawan, Chanati; Studer, Michele; Hensch, Takao K; Arlotta, PaolaNeuron2011 Feb 24763-7921338885
Development of proneurogenic, neuroprotective small molecules.MacMillan, Karen S; Naidoo, Jacinth; Liang, Jue; Melito, Lisa; Williams, Noelle S; Morlock, Lorraine; Huntington, Paula J; Estill, Sandi Jo; Longgood, Jamie; Becker, Ginger L; McKnight, Steven L; Pieper, Andrew A; De Brabander, Jef K; Ready, Joseph MJournal of the American Chemical Society2011 Feb 91428-3721210688
Nanofiber membranes with controllable microwells and structural cues and their use in forming cell microarrays and neuronal networks.Xie, Jingwei; Liu, Wenying; MacEwan, Matthew R; Yeh, Yi-Chun; Thomopoulos, Stavros; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2011 Feb 7293-721294253
The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells.Qi, Hongying; Watanabe, Toshiaki; Ku, Hsueh-Yen; Liu, Na; Zhong, Mei; Lin, HaifanThe Journal of biological chemistry2011 Feb 43789-9721106531
Morphological phase diagram for lipid membrane domains with entropic tension.Rim, J E; Ursell, T S; Phillips, R; Klug, W SPhysical review letters2011 Feb 405780121405437
Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii).Kim, Hyun Jung; Du, Wenbin; Ismagilov, Rustem FIntegrative biology : quantitative biosciences from nano to macro2011 Feb126-3320717565
Control of masculinization of the brain and behavior.Wu, Melody V; Shah, Nirao MCurrent opinion in neurobiology2011 Feb116-2320970320
Movement, technology and discovery in the zebrafish.McLean, David L; Fetcho, Joseph RCurrent opinion in neurobiology2011 Feb110-520970321
Efficient decoding with steady-state Kalman filter in neural interface systems.Malik, Wasim Q; Truccolo, Wilson; Brown, Emery N; Hochberg, Leigh RIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society2011 Feb25-3421078582
Semele: a killer-male, rescue-female system for suppression and replacement of insect disease vector populations.Marshall, John M; Pittman, Geoffrey W; Buchman, Anna B; Hay, Bruce AGenetics2011 Feb535-5121078687
Protein folding in the cell: challenges and progress.Gershenson, Anne; Gierasch, Lila MCurrent opinion in structural biology2011 Feb32-4121112769
In-cell protein NMR and protein leakage.Barnes, Christopher O; Pielak, Gary JProteins2011 Feb347-5121120863
Amygdala volume and social network size in humans.Bickart, Kevin C; Wright, Christopher I; Dautoff, Rebecca J; Dickerson, Bradford C; Barrett, Lisa FeldmanNature neuroscience2011 Feb163-421186358
Closely spaced pregnancies are associated with increased odds of autism in California sibling births.Cheslack-Postava, Keely; Liu, Kayuet; Bearman, Peter SPediatrics2011 Feb246-5321220394
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans.Leifer, Andrew M; Fang-Yen, Christopher; Gershow, Marc; Alkema, Mark J; Samuel, Aravinthan D TNature methods2011 Feb147-5221240279
Dynamic local unfolding in the serpin ýý-1 antitrypsin provides a mechanism for loop insertion and polymerization.Krishnan, Beena; Gierasch, Lila MNature structural & molecular biology2011 Feb222-621258324
Considering PTSD from the perspective of brain processes: a psychological construction approach.Suvak, Michael K; Barrett, Lisa FeldmanJournal of traumatic stress2011 Feb3-2421298725
Densely interconnected transcriptional circuits control cell states in human hematopoiesis.Novershtern, Noa; Subramanian, Aravind; Lawton, Lee N; Mak, Raymond H; Haining, W Nicholas; McConkey, Marie E; Habib, Naomi; Yosef, Nir; Chang, Cindy Y; Shay, Tal; Frampton, Garrett M; Drake, Adam C B; Leskov, Ilya; Nilsson, Bjorn; Preffer, Fred; DombkowsCell2011 Jan 21296-30921241896
How one bad protein spoils the barrel: structural details of ýý2-microglobulin amyloidogenicity.Gierasch, Lila MMolecular cell2011 Jan 21129-3121255721
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.Morowitz, Michael J; Denef, Vincent J; Costello, Elizabeth K; Thomas, Brian C; Poroyko, Valeriy; Relman, David A; Banfield, Jillian FProceedings of the National Academy of Sciences of the United States of America2011 Jan 181128-3321191099
Using mechanobiological mimicry of red blood cells to extend circulation times of hydrogel microparticles.Merkel, Timothy J; Jones, Stephen W; Herlihy, Kevin P; Kersey, Farrell R; Shields, Adam R; Napier, Mary; Luft, J Christopher; Wu, Huali; Zamboni, William C; Wang, Andrew Z; Bear, James E; DeSimone, Joseph MProceedings of the National Academy of Sciences of the United States of America2011 Jan 11586-9121220299
Bacteria as control engineers.Allison, Kyle R; Collins, James JMolecular cell2011 Jan 74-521211717
Tunable signal processing in synthetic MAP kinase cascades.O'Shaughnessy, Ellen C; Palani, Santhosh; Collins, James J; Sarkar, Casim ACell2011 Jan 7119-3121215374
Identification of candidate IgG biomarkers for Alzheimer's disease via combinatorial library screening.Reddy, M Muralidhar; Wilson, Rosemary; Wilson, Johnnie; Connell, Steven; Gocke, Anne; Hynan, Linda; German, Dwight; Kodadek, ThomasCell2011 Jan 7132-4221215375
Dynamic assessment of baroreflex control of heart rate during induction of propofol anesthesia using a point process method.Chen, Zhe; Purdon, Patrick L; Harrell, Grace; Pierce, Eric T; Walsh, John; Brown, Emery N; Barbieri, RiccardoAnnals of biomedical engineering2011 Jan260-7620945159
Alternative macrophage activation and metabolism.Odegaard, Justin I; Chawla, AjayAnnual review of pathology2011275-9721034223
Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit.Ni, Qiang; Ganesan, Ambhighainath; Aye-Han, Nwe-Nwe; Gao, Xinxin; Allen, Michael D; Levchenko, Andre; Zhang, JinNature chemical biology2011 Jan34-4021102470
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time.Pride, David T; Sun, Christine L; Salzman, Julia; Rao, Nitya; Loomer, Peter; Armitage, Gary C; Banfield, Jillian F; Relman, David AGenome research2011 Jan126-3621149389
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).Sander, Jeffry D; Dahlborg, Elizabeth J; Goodwin, Mathew J; Cade, Lindsay; Zhang, Feng; Cifuentes, Daniel; Curtin, Shaun J; Blackburn, Jessica S; Thibodeau-Beganny, Stacey; Qi, Yiping; Pierick, Christopher J; Hoffman, Ellen; Maeder, Morgan L; Khayter, CydNature methods2011 Jan67-921151135
Epilepsy as a spectrum disorder: Implications from novel clinical and basic neuroscience.Jensen, Frances EEpilepsia2011 Jan1-621214533
Blinders, phenotype, and fashionable genetic analysis: a critical examination of the current state of epilepsy genetic studies.Greenberg, David A; Subaran, RyanEpilepsia2011 Jan1-921219301
ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.Reyon, Deepak; Kirkpatrick, Jessica R; Sander, Jeffry D; Zhang, Feng; Voytas, Daniel F; Joung, J Keith; Dobbs, Drena; Coffman, Clark RBMC genomics20118321276248
A low T regulatory cell response may contribute to both viral control and generalized immune activation in HIV controllers.Hunt, Peter W; Landay, Alan L; Sinclair, Elizabeth; Martinson, Jeffrey A; Hatano, Hiroyu; Emu, Brinda; Norris, Philip J; Busch, Michael P; Martin, Jeffrey N; Brooks, Cicely; McCune, Joseph M; Deeks, Steven GPloS one2011e1592421305005
Thermodynamics of biological processes.Garcia, Hernan G; Kondev, Jane; Orme, Nigel; Theriot, Julie A; Phillips, RobMethods in enzymology201127-5921333788
Microfluidics using spatially defined arrays of droplets in one, two, and three dimensions.Pompano, Rebecca R; Liu, Weishan; Du, Wenbin; Ismagilov, Rustem FAnnual review of analytical chemistry (Palo Alto, Calif.)201159-8121370983
Stem cells in veterinary medicine.Fortier, Lisa A; Travis, Alexander JStem cell research & therapy2011921371354
Emotion Generation and Emotion Regulation: One or Two Depends on Your Point of View.Gross, James J; Barrett, Lisa FeldmanEmotion review2011 Jan16-Aug21479078
Reporting from the field: genetically encoded fluorescent reporters uncover signaling dynamics in living biological systems.Mehta, Sohum; Zhang, JinAnnual review of biochemistry2011375-40121495849
General anesthesia and altered states of arousal: a systems neuroscience analysis.Brown, Emery N; Purdon, Patrick L; Van Dort, Christa JAnnual review of neuroscience2011601-2821513454
Shear thickening of F-actin networks crosslinked with non-muscle myosin IIB.Norstrom, Melanie; Gardel, Margaret LSoft matter2011 Jan 13228-323321552431
A guide to delineate the logic of neurovascular signaling in the brain.Kleinfeld, David; Blinder, Pablo; Drew, Patrick J; Driscoll, Jonathan D; Muller, Arnaud; Tsai, Philbert S; Shih, Andy YFrontiers in neuroenergetics2011121559095
Denoising two-photon calcium imaging data.Malik, Wasim Q; Schummers, James; Sur, Mriganka; Brown, Emery NPloS one2011e2049021687727
Combining Computational Fluid Dynamics and Agent-Based Modeling: a new approach to evacuation planning.Epstein, Joshua M; Pankajakshan, Ramesh; Hammond, Ross APloS one2011e2013921687788
Immune activation, CD4+ T cell counts, and viremia exhibit oscillatory patterns over time in patients with highly resistant HIV infection.Kitchen, Christina M R; Yeghiazarian, Lilit; Hoh, Rebecca; McCune, Joseph M; Sinclair, Elizabeth; Martin, Jeffrey N; Deeks, Steven GPloS one2011e2119021701594
A dynamical systems view of motor preparation: implications for neural prosthetic system design.Shenoy, Krishna V; Kaufman, Matthew T; Sahani, Maneesh; Churchland, Mark MProgress in brain research201133-5821763517
Future developments in brain-machine interface research.Lebedev, Mikhail A; Tate, Andrew J; Hanson, Timothy L; Li, Zheng; O'Doherty, Joseph E; Winans, Jesse A; Ifft, Peter J; Zhuang, Katie Z; Fitzsimmons, Nathan A; Schwarz, David A; Fuller, Andrew M; An, Je Hi; Nicolelis, Miguel A LClinics (Sao Paulo, Brazil)201125-3221779720
Induction of stable drug resistance in human breast cancer cells using a combinatorial zinc finger transcription factor library.Lee, Jeongeun; Hirsh, Andrew S; Wittner, Ben S; Maeder, Morgan L; Singavarapu, Rajasekhar; Lang, Magdalena; Janarthanan, Sailajah; McDermott, Ultan; Yajnik, Vijay; Ramaswamy, Sridhar; Joung, J Keith; Sgroi, Dennis CPloS one2011e2111221818254
A resource for discovering specific and universal biomarkers for distributed stem cells.Noh, Minsoo; Smith, Janet L; Huh, Yang Hoon; Sherley, James LPloS one2011e2207721818293
Toward a whole-body neuroprosthetic.Lebedev, Mikhail A; Nicolelis, Miguel A LProgress in brain research201147-6021867793
LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates.Moughon, Stewart E; Samudrala, RamBMC bioinformatics201136821920038
Engineering zinc finger nucleases for targeted mutagenesis of zebrafish.Sander, Jeffry D; Yeh, J-R Joanna; Peterson, Randall T; Joung, J KeithMethods in cell biology201151-821924156
Stress-induced loss of heterozygosity in Candida: a possible missing link in the ability to evolve.Rosenberg, Susan MmBio201121933916
Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms.Juliano, Celina; Wang, Jianquan; Lin, HaifanAnnual review of genetics2011447-6921942366
Nanowire biosensors for label-free, real-time, ultrasensitive protein detection.Zheng, Gengfeng; Lieber, Charles MMethods in molecular biology (Clifton, N.J.)2011223-3721948419
Motor cortical networks for skilled movements have dynamic properties that are related to accurate reaching.Putrino, David F; Chen, Zhe; Ghosh, Soumya; Brown, Emery NNeural plasticity201141354322007332
Protein kinase C ýý is required for T cell activation and homeostatic proliferation.Fu, Guo; Hu, Jianfang; Niederberger-Magnenat, Nathalie; Rybakin, Vasily; Casas, Javier; Yachi, Pia P; Feldstein, Stephanie; Ma, Bo; Hoerter, John A H; Ampudia, Jeanette; Rigaud, Stephanie; Lambolez, Florence; Gavin, Amanda L; Sauer, Karsten; Cheroutre, HiScience signaling2011ra8422155788
Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.Khan, Zia; Amini, Sasan; Bloom, Joshua S; Ruse, Cristian; Caudy, Amy A; Kruglyak, Leonid; Singh, Mona; Perlman, David H; Tavazoie, SaeedGenome biology2011R12222182234
What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli?Shee, Chandan; Ponder, Rebecca; Gibson, Janet L; Rosenberg, Susan MJournal of molecular microbiology and biotechnology20118-1922248539
Monkey models for brain-machine interfaces: the need for maintaining diversity.Nuyujukian, Paul; Fan, Joline M; Gilja, Vikash; Kalanithi, Paul S; Chestek, Cindy A; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111301-522254555
A state-space model of the burst suppression ratio.Chemali, Jessica J; Wong, K F Kevin; Solt, Ken; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111431-422254587
Correcting for serial dependence in studies of respiratory dynamics.Gong, Jen J; Wong, Kin Foon Kevin; Cotten, Joseph F; Solt, Ken; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111721-422254658
Phase-based measures of cross-frequency coupling in brain electrical dynamics under general anesthesia.Mukamel, Eran A; Wong, Kin Foon; Prerau, Michael J; Brown, Emery N; Purdon, Patrick LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20111981-422254722
Point-process analysis of neural spiking activity of muscle spindles recorded from thin-film longitudinal intrafascicular electrodes.Citi, Luca; Djilas, Milan; Azevedo-Coste, Christine; Yoshida, Ken; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20112311-422254803
Modeling two-photon calcium fluorescence of episodic V1 recordings using multifrequency analysis.Zheng, Henry W; Malik, Wasim Q; Runyan, Caroline A; Sur, Mriganka; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20113016-922254975
Assessing neuronal interactions of cell assemblies during general anesthesia.Chen, Zhe; Vijayan, Sujith; Ching, ShiNung; Hale, Greg; Flores, Francisco J; Wilson, Matthew A; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114175-822255259
Bayesian analysis of trinomial data in behavioral experiments and its application to human studies of general anesthesia.Wong, Kin Foon Kevin; Smith, Anne C; Pierce, Eric T; Harrell, P Grace; Walsh, John L; Salazar, Andres Felipe; Tavares, Casie L; Cimenser, Aylin; Prerau, Michael J; Mukamel, Eran A; Sampson, Aaron; Purdon, Patrick L; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114705-822255388
Robust time-varying multivariate coherence estimation: application to electroencephalogram recordings during general anesthesia.Wong, Kin Foon Kevin; Mukamel, Eran A; Salazar, Andres Felipe; Pierce, Eric T; Harrell, P Grace; Walsh, John L; Sampson, Aaron; Brown, Emery N; Purdon, Patrick LConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20114725-822255393
Instantaneous assessment of autonomic cardiovascular control during general anesthesia.Chen, Zhe; Citi, Luca; Purdon, Patrick L; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20118444-722256307
Cortical correlates of fitts' law.Ifft, Peter J; Lebedev, Mikhail A; Nicolelis, Miguel A LFrontiers in integrative neuroscience20118522275888
Culture environment-induced pluripotency of SACK-expanded tissue stem cells.Pare, Jean-Francois; Sherley, James LJournal of biomedicine & biotechnology201131245722523467
Design, synthesis, and characterization of novel nanowire structures for photovoltaics and intracellular probes.Tian, Bozhi; Lieber, Charles MPure and applied chemistry. Chimie pure et appliquee2011 Jan 12153-216922707797
General anesthesia, sleep, and coma.Brown, Emery N; Lydic, Ralph; Schiff, Nicholas DThe New England journal of medicine2010 Dec 302638-5021190458
Thermodynamic analysis of ligand-induced changes in protein thermal unfolding applied to high-throughput determination of ligand affinities with extrinsic fluorescent dyes.Layton, Curtis J; Hellinga, Homme WBiochemistry2010 Dec 2810831-4121050007
Thalamocortical model for a propofol-induced alpha-rhythm associated with loss of consciousness.Ching, Shinung; Cimenser, Aylin; Purdon, Patrick L; Brown, Emery N; Kopell, Nancy JProceedings of the National Academy of Sciences of the United States of America2010 Dec 2822665-7021149695
IL-4/STAT6 immune axis regulates peripheral nutrient metabolism and insulin sensitivity.Ricardo-Gonzalez, Roberto R; Red Eagle, Alex; Odegaard, Justin I; Jouihan, Hani; Morel, Christine R; Heredia, Jose E; Mukundan, Lata; Wu, Davina; Locksley, Richard M; Chawla, AjayProceedings of the National Academy of Sciences of the United States of America2010 Dec 2822617-2221149710
A computational model predicts Xenopus meiotic spindle organization.Loughlin, Rose; Heald, Rebecca; Nedelec, FrancoisThe Journal of cell biology2010 Dec 271239-4921173114
Tunable bifunctional silyl ether cross-linkers for the design of acid-sensitive biomaterials.Parrott, Matthew C; Luft, J Chris; Byrne, James D; Fain, John H; Napier, Mary E; Desimone, Joseph MJournal of the American Chemical Society2010 Dec 2217928-3221105720
Three-dimensional scaffolds for tissue engineering: the importance of uniformity in pore size and structure.Choi, Sung-Wook; Zhang, Yu; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2010 Dec 2119001-621090781
Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans.Mold, Jeff E; Venkatasubrahmanyam, Shivkumar; Burt, Trevor D; Michaelsson, Jakob; Rivera, Jose M; Galkina, Sofiya A; Weinberg, Kenneth; Stoddart, Cheryl A; McCune, Joseph MScience (New York, N.Y.)2010 Dec 171695-921164017
MicroRNAs in a cardiac loop: progenitor or myocyte?Evans, Sylvia M; Moretti, Alessandra; Laugwitz, Karl-LudwigDevelopmental cell2010 Dec 14787-821145492
An oscillatory switch in mTOR kinase activity sets regulatory T cell responsiveness.Procaccini, Claudio; De Rosa, Veronica; Galgani, Mario; Abanni, Luisa; Cali, Gaetano; Porcellini, Antonio; Carbone, Fortunata; Fontana, Silvia; Horvath, Tamas L; La Cava, Antonio; Matarese, GiuseppeImmunity2010 Dec 14929-4121145759
Myocardial lineage development.Evans, Sylvia M; Yelon, Deborah; Conlon, Frank L; Kirby, Margaret LCirculation research2010 Dec 101428-4421148449
Development of antibody surrogates for the treatment of cancers and autoimmune disease.Kodadek, ThomasCurrent opinion in chemical biology2010 Dec721-720674470
Synthetic receptors with antibody-like binding affinities.Kodadek, ThomasCurrent opinion in chemical biology2010 Dec713-2020674471
Autonomous zinc-finger nuclease pairs for targeted chromosomal deletion.Sollu, Cem; Pars, Kaweh; Cornu, Tatjana I; Thibodeau-Beganny, Stacey; Maeder, Morgan L; Joung, J Keith; Heilbronn, Regine; Cathomen, ToniNucleic acids research2010 Dec8269-7620716517
Transcription by the numbers redux: experiments and calculations that surprise.Garcia, Hernan G; Sanchez, Alvaro; Kuhlman, Thomas; Kondev, Jane; Phillips, RobTrends in cell biology2010 Dec723-3320801657
Selective degradation of aggregate-prone CryAB mutants by HSPB1 is mediated by ubiquitin-proteasome pathways.Zhang, Huali; Rajasekaran, Namakkal S; Orosz, Andras; Xiao, Xianzhong; Rechsteiner, Martin; Benjamin, Ivor JJournal of molecular and cellular cardiology2010 Dec918-3020863832
SmashCell: a software framework for the analysis of single-cell amplified genome sequences.Harrington, Eoghan D; Arumugam, Manimozhiyan; Raes, Jeroen; Bork, Peer; Relman, David ABioinformatics (Oxford, England)2010 Dec 12979-8020966005
Inorganic nanoparticle-based contrast agents for molecular imaging.Cho, Eun Chul; Glaus, Charles; Chen, Jingyi; Welch, Michael J; Xia, YounanTrends in molecular medicine2010 Dec561-7321074494
IL-22+ CD4+ T cells are associated with therapeutic trichuris trichiura infection in an ulcerative colitis patient.Broadhurst, Mara J; Leung, Jacqueline M; Kashyap, Vikram; McCune, Joseph M; Mahadevan, Uma; McKerrow, James H; Loke, P'ngScience translational medicine2010 Dec 160ra8821123809
Transgenerational genetic effects.Nelson, Vicki R; Nadeau, Joseph HEpigenomics2010 Dec797-80622122083
Lynx1, a cholinergic brake, limits plasticity in adult visual cortex.Morishita, Hirofumi; Miwa, Julie M; Heintz, Nathaniel; Hensch, Takao KScience (New York, N.Y.)2010 Nov 261238-4021071629
Minimal bending energies of bilayer polyhedra.Haselwandter, Christoph A; Phillips, RobPhysical review letters2010 Nov 2622810121231425
Au@Ag core-shell nanocubes with finely tuned and well-controlled sizes, shell thicknesses, and optical properties.Ma, Yanyun; Li, Weiyang; Cho, Eun Chul; Li, Zhiyuan; Yu, Taekyung; Zeng, Jie; Xie, Zhaoxiong; Xia, YounanACS nano2010 Nov 236725-3420964400
Cortical preparatory activity: representation of movement or first cog in a dynamical machine?Churchland, Mark M; Cunningham, John P; Kaufman, Matthew T; Ryu, Stephen I; Shenoy, Krishna VNeuron2010 Nov 4387-40021040842
Chronic label-free volumetric photoacoustic microscopy of melanoma cells in three-dimensional porous scaffolds.Zhang, Yu; Cai, Xin; Choi, Sung-Wook; Kim, Chulhong; Wang, Lihong V; Xia, YounanBiomaterials2010 Nov8651-820727581
Naive human T cells are activated and proliferate in response to the heme oxygenase-1 inhibitor tin mesoporphyrin.Burt, Trevor D; Seu, Lillian; Mold, Jeffrey E; Kappas, Attallah; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2010 Nov 15279-8820921523
Running hot and cold: behavioral strategies, neural circuits, and the molecular machinery for thermotaxis in C. elegans and Drosophila.Garrity, Paul A; Goodman, Miriam B; Samuel, Aravinthan D; Sengupta, PialiGenes & development2010 Nov 12365-8221041406
Developmental regulation of group I metabotropic glutamate receptors in the premature brain and their protective role in a rodent model of periventricular leukomalacia.Jantzie, Lauren L; Talos, Delia M; Selip, Debra B; An, Li; Jackson, Michele C; Folkerth, Rebecca D; Deng, Wenbin; Jensen, Frances ENeuron glia biology2010 Nov277-8822169210
Imaging activity-dependent regulation of neurexin-neuroligin interactions using trans-synaptic enzymatic biotinylation.Thyagarajan, Amar; Ting, Alice YCell2010 Oct 29456-6920933261
Cellular response of polyvalent oligonucleotide-gold nanoparticle conjugates.Massich, Matthew D; Giljohann, David A; Schmucker, Abrin L; Patel, Pinal C; Mirkin, Chad AACS nano2010 Oct 265641-620860397
The aging stress response.Haigis, Marcia C; Yankner, Bruce AMolecular cell2010 Oct 22333-4420965426
Digital PCR on a SlipChip.Shen, Feng; Du, Wenbin; Kreutz, Jason E; Fok, Alice; Ismagilov, Rustem FLab on a chip2010 Oct 212666-7220596567
A temperature-sensitive drug release system based on phase-change materials.Choi, Sung-Wook; Zhang, Yu; Xia, YounanAngewandte Chemie (International ed. in English)2010 Oct 187904-820839209
Nuclear size is regulated by importin ýý and Ntf2 in Xenopus.Levy, Daniel L; Heald, RebeccaCell2010 Oct 15288-9820946986
Nanoelectromechanical resonator arrays for ultrafast, gas-phase chromatographic chemical analysis.Li, Mo; Myers, E B; Tang, H X; Aldridge, S J; McCaig, H C; Whiting, J J; Simonson, R J; Lewis, N S; Roukes, M LNano letters2010 Oct 133899-90320795729
Broadband plasmonic microlenses based on patches of nanoholes.Gao, Hanwei; Hyun, Jerome K; Lee, Min Hyung; Yang, Jiun-Chan; Lauhon, Lincoln J; Odom, Teri WNano letters2010 Oct 134111-620839781
Biocompatibility and Reduced Drug Absorption of Sol-Gel-Treated Poly(dimethyl siloxane) for Microfluidic Cell Culture Applications.Gomez-Sjoberg, Rafael; Leyrat, Anne A; Houseman, Benjamin T; Shokat, Kevan; Quake, Stephen RAnalytical chemistry2010 Oct 1120936785
Multifactorial determinants of protein expression in prokaryotic open reading frames.Allert, Malin; Cox, J Colin; Hellinga, Homme WJournal of molecular biology2010 Oct 8905-1820727358
The potential functions of primary microRNAs in target recognition and repression.Trujillo, Robin Deis; Yue, Si-Biao; Tang, Yujie; O'Gorman, William E; Chen, Chang-ZhengThe EMBO journal2010 Oct 63272-8520808284
Engineering the genomes of wild insect populations: challenges, and opportunities provided by synthetic Medea selfish genetic elements.Hay, Bruce A; Chen, Chun-Hong; Ward, Catherine M; Huang, Haixia; Su, Jessica T; Guo, MingJournal of insect physiology2010 Oct1402-1320570677
Discrete time rescaling theorem: determining goodness of fit for discrete time statistical models of neural spiking.Haslinger, Robert; Pipa, Gordon; Brown, EmeryNeural computation2010 Oct2477-50620608868
Autonomous head-mounted electrophysiology systems for freely behaving primates.Gilja, Vikash; Chestek, Cindy A; Nuyujukian, Paul; Foster, Justin; Shenoy, Krishna VCurrent opinion in neurobiology2010 Oct676-8620655733
Conserved F-actin dynamics and force transmission at cell adhesions.Maruthamuthu, Venkat; Aratyn-Schaus, Yvonne; Gardel, Margaret LCurrent opinion in cell biology2010 Oct583-820728328
Characterization of the proteomes associating with three distinct membrane raft sub-types in murine sperm.Asano, Atsushi; Nelson, Jacquelyn L; Zhang, Sheng; Travis, Alexander JProteomics2010 Oct3494-50520815087
Using light to control signaling cascades in live neurons.Rana, Anshul; Dolmetsch, Ricardo ECurrent opinion in neurobiology2010 Oct617-2220850295
In obesity and weight loss, all roads lead to the mighty macrophage.Red Eagle, Alex; Chawla, AjayThe Journal of clinical investigation2010 Oct3437-4020877005
The CRAC channel activator STIM1 binds and inhibits L-type voltage-gated calcium channels.Park, Chan Young; Shcheglovitov, Aleksandr; Dolmetsch, RicardoScience (New York, N.Y.)2010 Oct 1101-520929812
Passenger mutations as a marker of clonal cell lineages in emerging neoplasia.Salk, Jesse J; Horwitz, Marshall SSeminars in cancer biology2010 Oct294-30320951806
Radially aligned, electrospun nanofibers as dural substitutes for wound closure and tissue regeneration applications.Xie, Jingwei; Macewan, Matthew R; Ray, Wilson Z; Liu, Wenying; Siewe, Daku Y; Xia, YounanACS nano2010 Sep 285027-3620695478
Probing the micelle-bound aggregation-prone state of ýý-synuclein with (19)F NMR spectroscopy.Wang, Gui-Fang; Li, Conggang; Pielak, Gary JChembiochem : a European journal of chemical biology2010 Sep 241993-620730847
A general mechanism for network-dosage compensation in gene circuits.Acar, Murat; Pando, Bernardo F; Arnold, Frances H; Elowitz, Michael B; van Oudenaarden, AlexanderScience (New York, N.Y.)2010 Sep 241656-6020929850
Epigenetic memory in induced pluripotent stem cells.Kim, K; Doi, A; Wen, B; Ng, K; Zhao, R; Cahan, P; Kim, J; Aryee, M J; Ji, H; Ehrlich, L I R; Yabuuchi, A; Takeuchi, A; Cunniff, K C; Hongguang, H; McKinney-Freeman, S; Naveiras, O; Yoon, T J; Irizarry, R A; Jung, N; Seita, J; Hanna, J; Murakami, P; JaenisNature2010 Sep 16285-9020644535
A zyxin-mediated mechanism for actin stress fiber maintenance and repair.Smith, Mark A; Blankman, Elizabeth; Gardel, Margaret L; Luettjohann, Laura; Waterman, Clare M; Beckerle, Mary CDevelopmental cell2010 Sep 14365-7620833360
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.Callura, Jarred M; Dwyer, Daniel J; Isaacs, Farren J; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2010 Sep 715898-90320713708
Facile synthesis of Ag nanocubes of 30 to 70 nm in edge length with CF(3)COOAg as a precursor.Zhang, Qiang; Li, Weiyang; Wen, Long-Ping; Chen, Jingyi; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)2010 Sep 310234-920593441
Bacterial charity work leads to population-wide resistance.Lee, Henry H; Molla, Michael N; Cantor, Charles R; Collins, James JNature2010 Sep 282-520811456
Microbial invasion of the amniotic cavity in pregnancies with small-for-gestational-age fetuses.DiGiulio, Daniel B; Gervasi, Maria Teresa; Romero, Roberto; Vaisbuch, Edi; Mazaki-Tovi, Shali; Kusanovic, Juan Pedro; Seok, Kimberley S; Gomez, Ricardo; Mittal, Pooja; Gotsch, Francesca; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Kim, Chong Jai; Relman,Journal of perinatal medicine2010 Sep495-50220482466
Microbial invasion of the amniotic cavity in preeclampsia as assessed by cultivation and sequence-based methods.DiGiulio, Daniel B; Gervasi, Mariateresa; Romero, Roberto; Mazaki-Tovi, Shali; Vaisbuch, Edi; Kusanovic, Juan Pedro; Seok, Kimberley S; Gomez, Ricardo; Mittal, Pooja; Gotsch, Francesca; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Kim, Chong Jai; Relman, Journal of perinatal medicine2010 Sep503-1320482470
Comprehensive comparative analysis of strand-specific RNA sequencing methods.Levin, Joshua Z; Yassour, Moran; Adiconis, Xian; Nusbaum, Chad; Thompson, Dawn Anne; Friedman, Nir; Gnirke, Andreas; Regev, AvivNature methods2010 Sep709-1520711195
Volume exclusion and soft interaction effects on protein stability under crowded conditions.Miklos, Andrew C; Li, Conggang; Sharaf, Naima G; Pielak, Gary JBiochemistry2010 Aug 246984-9120672856
In vivo molecular photoacoustic tomography of melanomas targeted by bioconjugated gold nanocages.Kim, Chulhong; Cho, Eun Chul; Chen, Jingyi; Song, Kwang Hyun; Au, Leslie; Favazza, Christopher; Zhang, Qiang; Cobley, Claire M; Gao, Feng; Xia, Younan; Wang, Lihong VACS nano2010 Aug 244559-6420731439
Chemical stimulation of the Arabidopsis thaliana root using multi-laminar flow on a microfluidic chip.Meier, Matthias; Lucchetta, Elena M; Ismagilov, Rustem FLab on a chip2010 Aug 212147-5320544086
Steroid receptor coactivator-3 expression in lung cancer and its role in the regulation of cancer cell survival and proliferation.Cai, Di; Shames, David S; Raso, Maria Gabriela; Xie, Yang; Kim, Young H; Pollack, Jonathan R; Girard, Luc; Sullivan, James P; Gao, Boning; Peyton, Michael; Nanjundan, Meera; Byers, Lauren; Heymach, John; Mills, Gordon; Gazdar, Adi F; Wistuba, Ignacio; KodCancer research2010 Aug 156477-8520663904
Three-dimensional, flexible nanoscale field-effect transistors as localized bioprobes.Tian, Bozhi; Cohen-Karni, Tzahi; Qing, Quan; Duan, Xiaojie; Xie, Ping; Lieber, Charles MScience (New York, N.Y.)2010 Aug 13830-420705858
A custody battle for the mind: evidence for extensive imprinting in the brain.Tollkuhn, Jessica; Xu, Xiaohong; Shah, Nirao MNeuron2010 Aug 12359-6220696374
Enhanced optical transmission mediated by localized plasmons in anisotropic, three-dimensional nanohole arrays.Yang, Jiun-Chan; Gao, Hanwei; Suh, Jae Yong; Zhou, Wei; Lee, Min Hyung; Odom, Teri WNano letters2010 Aug 113173-820698633
Frequency domain detection of biomolecules using silicon nanowire biosensors.Zheng, Gengfeng; Gao, Xuan P A; Lieber, Charles MNano letters2010 Aug 113179-8320698634
Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations.Anderson, James B; Funt, Jason; Thompson, Dawn Anne; Prabhu, Snehit; Socha, Amanda; Sirjusingh, Caroline; Dettman, Jeremy R; Parreiras, Lucas; Guttman, David S; Regev, Aviv; Kohn, Linda MCurrent biology : CB2010 Aug 101383-820637622
Genome-wide analysis reveals mechanisms modulating autophagy in normal brain aging and in Alzheimer's disease.Lipinski, Marta M; Zheng, Bin; Lu, Tao; Yan, Zhenyu; Py, Benedicte F; Ng, Aylwin; Xavier, Ramnik J; Li, Cheng; Yankner, Bruce A; Scherzer, Clemens R; Yuan, JunyingProceedings of the National Academy of Sciences of the United States of America2010 Aug 1014164-920660724
Ion-dependent dynamics of DNA ejections for bacteriophage lambda.Wu, David; Van Valen, David; Hu, Qicong; Phillips, RobBiophysical journal2010 Aug 91101-920712993
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.Huarte, Maite; Guttman, Mitchell; Feldser, David; Garber, Manuel; Koziol, Magdalena J; Kenzelmann-Broz, Daniela; Khalil, Ahmad M; Zuk, Or; Amit, Ido; Rabani, Michal; Attardi, Laura D; Regev, Aviv; Lander, Eric S; Jacks, Tyler; Rinn, John LCell2010 Aug 6409-1920673990
Regulation of myeloid leukaemia by the cell-fate determinant Musashi.Ito, Takahiro; Kwon, Hyog Young; Zimdahl, Bryan; Congdon, Kendra L; Blum, Jordan; Lento, William E; Zhao, Chen; Lagoo, Anand; Gerrard, Gareth; Foroni, Letizia; Goldman, John; Goh, Harriet; Kim, Soo-Hyun; Kim, Dong-Wook; Chuah, Charles; Oehler, Vivian G; RNature2010 Aug 5765-820639863
Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state.Hong, Jiang; Gierasch, Lila MJournal of the American Chemical Society2010 Aug 410445-5220662522
Bacterial diversity in the oral cavity of 10 healthy individuals.Bik, Elisabeth M; Long, Clara Davis; Armitage, Gary C; Loomer, Peter; Emerson, Joanne; Mongodin, Emmanuel F; Nelson, Karen E; Gill, Steven R; Fraser-Liggett, Claire M; Relman, David AThe ISME journal2010 Aug962-7420336157
Roles of monkey premotor neuron classes in movement preparation and execution.Kaufman, Matthew T; Churchland, Mark M; Santhanam, Gopal; Yu, Byron M; Afshar, Afsheen; Ryu, Stephen I; Shenoy, Krishna VJournal of neurophysiology2010 Aug799-81020538784
Reading chimpanzee faces: evidence for the role of verbal labels in categorical perception of emotion.Fugate, Jennifer M B; Gouzoules, Harold; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2010 Aug544-5420677871
Towards A Fully Automated High-Throughput Phototransfection System.Cappelleri, David J; Halasz, Adam; Sul, Jai-Yoon; Kim, Tae Kyung; Eberwine, James; Kumar, VijayJALA (Charlottesville, Va.)2010 Aug 1329-34120706617
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.Taniguchi, Yuichi; Choi, Paul J; Li, Gene-Wei; Chen, Huiyi; Babu, Mohan; Hearn, Jeremy; Emili, Andrew; Xie, X SunneyScience (New York, N.Y.)2010 Jul 30533-820671182
Regulation of cell motile behavior by crosstalk between cadherin- and integrin-mediated adhesions.Borghi, Nicolas; Lowndes, Molly; Maruthamuthu, Venkat; Gardel, Margaret L; Nelson, W JamesProceedings of the National Academy of Sciences of the United States of America2010 Jul 2713324-920566866
In vitro mineralization by preosteoblasts in poly(DL-lactide-co-glycolide) inverse opal scaffolds reinforced with hydroxyapatite nanoparticles.Choi, Sung-Wook; Zhang, Yu; Thomopoulos, Stavros; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2010 Jul 2012126-3120450216
Dead-end filling of SlipChip evaluated theoretically and experimentally as a function of the surface chemistry and the gap size between the plates for lubricated and dry SlipChips.Li, Liang; Karymov, Mikhail A; Nichols, Kevin P; Ismagilov, Rustem FLangmuir : the ACS journal of surfaces and colloids2010 Jul 2012465-7120575548
Uniform beads with controllable pore sizes for biomedical applications.Choi, Sung-Wook; Yeh, Yi-Chun; Zhang, Yu; Sung, Hsing-Wen; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Jul 191492-820578116
Effects of proteins on protein diffusion.Wang, Yaqiang; Li, Conggang; Pielak, Gary JJournal of the American Chemical Society2010 Jul 149392-720560582
Transient frictional slip between integrin and the ECM in focal adhesions under myosin II tension.Aratyn-Schaus, Yvonne; Gardel, Margaret LCurrent biology : CB2010 Jul 131145-5320541412
Discovery of a proneurogenic, neuroprotective chemical.Pieper, Andrew A; Xie, Shanhai; Capota, Emanuela; Estill, Sandi Jo; Zhong, Jeannie; Long, Jeffrey M; Becker, Ginger L; Huntington, Paula; Goldman, Shauna E; Shen, Ching-Han; Capota, Maria; Britt, Jeremiah K; Kotti, Tiina; Ure, Kerstin; Brat, Daniel J; WilCell2010 Jul 939-5120603013
Genetic technologies. Synthetic "life," ethics, national security, and public discourse.Cho, Mildred K; Relman, David AScience (New York, N.Y.)2010 Jul 238-920595601
Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes.DiGiulio, Daniel B; Romero, Roberto; Kusanovic, Juan Pedro; Gomez, Ricardo; Kim, Chong Jai; Seok, Kimberley S; Gotsch, Francesca; Mazaki-Tovi, Shali; Vaisbuch, Edi; Sanders, Katherine; Bik, Elisabeth M; Chaiworapongsa, Tinnakorn; Oyarzun, Enrique; Relman,American journal of reproductive immunology (New York, N.Y. : 1989)2010 Jul 138-5720331587
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.Sander, Jeffry D; Maeder, Morgan L; Reyon, Deepak; Voytas, Daniel F; Joung, J Keith; Dobbs, DrenaNucleic acids research2010 JulW462-820435679
Lin28a transgenic mice manifest size and puberty phenotypes identified in human genetic association studies.Zhu, Hao; Shah, Samar; Shyh-Chang, Ng; Shinoda, Gen; Einhorn, William S; Viswanathan, Srinivas R; Takeuchi, Ayumu; Grasemann, Corinna; Rinn, John L; Lopez, Mary F; Hirschhorn, Joel N; Palmert, Mark R; Daley, George QNature genetics2010 Jul626-3020512147
A forward-genetic screen and dynamic analysis of lambda phage host-dependencies reveals an extensive interaction network and a new anti-viral strategy.Maynard, Nathaniel D; Birch, Elsa W; Sanghvi, Jayodita C; Chen, Lu; Gutschow, Miriam V; Covert, Markus WPLoS genetics2010 Jule100101720628568
The virus as metabolic engineer.Maynard, Nathaniel D; Gutschow, Miriam V; Birch, Elsa W; Covert, Markus WBiotechnology journal2010 Jul686-9420665642
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.Zhang, Feng; Maeder, Morgan L; Unger-Wallace, Erica; Hoshaw, Justin P; Reyon, Deepak; Christian, Michelle; Li, Xiaohong; Pierick, Christopher J; Dobbs, Drena; Peterson, Thomas; Joung, J Keith; Voytas, Daniel FProceedings of the National Academy of Sciences of the United States of America2010 Jun 2912028-3320508152
Synthetic strategies for studying embryonic development.Ouyang, Xiaohu; Chen, James KChemistry & biology2010 Jun 25590-60620609409
Establishing the design rules for DNA-mediated programmable colloidal crystallization.Macfarlane, Robert J; Jones, Matthew R; Senesi, Andrew J; Young, Kaylie L; Lee, Byeongdu; Wu, Jinsong; Mirkin, Chad AAngewandte Chemie (International ed. in English)2010 Jun 214589-9220486143
Differential involvement of excitatory and inhibitory neurons of cat motor cortex in coincident spike activity related to behavioral context.Putrino, David; Brown, Emery N; Mastaglia, Frank L; Ghosh, SoumyaThe Journal of neuroscience : the official journal of the Society for Neuroscience2010 Jun 98048-5620534853
Conversion of a yeast prion protein to an infectious form in bacteria.Garrity, Sean J; Sivanathan, Viknesh; Dong, Jijun; Lindquist, Susan; Hochschild, AnnProceedings of the National Academy of Sciences of the United States of America2010 Jun 810596-60120484678
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.Goodarzi, Hani; Bennett, Bryson D; Amini, Sasan; Reaves, Marshall L; Hottes, Alison K; Rabinowitz, Joshua D; Tavazoie, SaeedMolecular systems biology2010 Jun 837820531407
Characterizing nonlinear heartbeat dynamics within a point process framework.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2010 Jun1335-4720172783
Using point process models to compare neural spiking activity in the subthalamic nucleus of Parkinson's patients and a healthy primate.Sarma, Sridevi V; Eden, Uri T; Cheng, Ming L; Williams, Ziv M; Hu, Rollin; Eskandar, Emad; Brown, Emery NIEEE transactions on bio-medical engineering2010 Jun1297-30520172804
RNA: state memory and mediator of cellular phenotype.Kim, Junhyong; Eberwine, JamesTrends in cell biology2010 Jun311-820382532
How antibiotics kill bacteria: from targets to networks.Kohanski, Michael A; Dwyer, Daniel J; Collins, James JNature reviews. Microbiology2010 Jun423-3520440275
Nanoliter multiplex PCR arrays on a SlipChip.Shen, Feng; Du, Wenbin; Davydova, Elena K; Karymov, Mikhail A; Pandey, Janmajay; Ismagilov, Rustem FAnalytical chemistry2010 Jun 14606-1220446698
Control of macrophage activation and function by PPARs.Chawla, AjayCirculation research2010 May 281559-6920508200
Unique physical properties and interactions of the domains of methylated DNA binding protein 2.Ghosh, Rajarshi P; Nikitina, Tatiana; Horowitz-Scherer, Rachel A; Gierasch, Lila M; Uversky, Vladimir N; Hite, Kristopher; Hansen, Jeffrey C; Woodcock, Christopher LBiochemistry2010 May 254395-41020405910
Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection.Kosmrlj, Andrej; Read, Elizabeth L; Qi, Ying; Allen, Todd M; Altfeld, Marcus; Deeks, Steven G; Pereyra, Florencia; Carrington, Mary; Walker, Bruce D; Chakraborty, Arup KNature2010 May 20350-420445539
Tryptophan catabolism by indoleamine 2,3-dioxygenase 1 alters the balance of TH17 to regulatory T cells in HIV disease.Favre, David; Mold, Jeff; Hunt, Peter W; Kanwar, Bittoo; Loke, P'ng; Seu, Lillian; Barbour, Jason D; Lowe, Margaret M; Jayawardene, Anura; Aweeka, Francesca; Huang, Yong; Douek, Daniel C; Brenchley, Jason M; Martin, Jeffrey N; Hecht, Frederick M; Deeks, SScience translational medicine2010 May 1932ra3620484731
Optimization of traction force microscopy for micron-sized focal adhesions.Stricker, Jonathan; Sabass, Benedikt; Schwarz, Ulrich S; Gardel, Margaret LJournal of physics. Condensed matter : an Institute of Physics journal2010 May 1919410420523913
Cell-substrate interactions.Gardel, Margaret; Schwarz, UlrichJournal of physics. Condensed matter : an Institute of Physics journal2010 May 1919030121386358
Colloquium paper: working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history.Scheinfeldt, Laura B; Soi, Sameer; Tishkoff, Sarah AProceedings of the National Academy of Sciences of the United States of America2010 May 118931-820445100
Seed-mediated synthesis of truncated gold decahedrons with a AuCl/oleylamine complex as precursor.Ma, Yanyun; Zeng, Jie; Li, Weiyang; McKiernan, Maureen; Xie, Zhaoxiong; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2010 May 41930-420301132
Bright three-photon luminescence from gold/silver alloyed nanostructures for bioimaging with negligible photothermal toxicity.Tong, Ling; Cobley, Claire M; Chen, Jingyi; Xia, Younan; Cheng, Ji-XinAngewandte Chemie (International ed. in English)2010 May 33485-820544899
The spatial structure of autism in California, 1993-2001.Mazumdar, Soumya; King, Marissa; Liu, Ka-Yuet; Zerubavel, Noam; Bearman, PeterHealth & place2010 May539-4620097113
Targeting gold nanocages to cancer cells for photothermal destruction and drug delivery.Cobley, Claire M; Au, Leslie; Chen, Jingyi; Xia, YounanExpert opinion on drug delivery2010 May577-8720345327
Synthetic biology: applications come of age.Khalil, Ahmad S; Collins, James JNature reviews. Genetics2010 May367-7920395970
The miR-17-92 microRNA polycistron regulates MLL leukemia stem cell potential by modulating p21 expression.Wong, Piu; Iwasaki, Masayuki; Somervaille, Tim C P; Ficara, Francesca; Carico, Christine; Arnold, Christopher; Chen, Chang-Zheng; Cleary, Michael LCancer research2010 May 13833-4220406979
Dynamic single-cell imaging of direct reprogramming reveals an early specifying event.Smith, Zachary D; Nachman, Iftach; Regev, Aviv; Meissner, AlexanderNature biotechnology2010 May521-620436460
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.Guttman, Mitchell; Garber, Manuel; Levin, Joshua Z; Donaghey, Julie; Robinson, James; Adiconis, Xian; Fan, Lin; Koziol, Magdalena J; Gnirke, Andreas; Nusbaum, Chad; Rinn, John L; Lander, Eric S; Regev, AvivNature biotechnology2010 May503-1020436462
Social demographic change and autism.Liu, Kayuet; Zerubavel, Noam; Bearman, PeterDemography2010 May327-4320608100
Knockdown of Fanconi anemia genes in human embryonic stem cells reveals early developmental defects in the hematopoietic lineage.Tulpule, Asmin; Lensch, M William; Miller, Justine D; Austin, Karyn; D'Andrea, Alan; Schlaeger, Thorsten M; Shimamura, Akiko; Daley, George QBlood2010 Apr 293453-6220089964
The androgen receptor governs the execution, but not programming, of male sexual and territorial behaviors.Juntti, Scott A; Tollkuhn, Jessica; Wu, Melody V; Fraser, Eleanor J; Soderborg, Taylor; Tan, Stella; Honda, Shin-Ichiro; Harada, Nobuhiro; Shah, Nirao MNeuron2010 Apr 29260-7220435002
Gold nanoparticles for biology and medicine.Giljohann, David A; Seferos, Dwight S; Daniel, Weston L; Massich, Matthew D; Patel, Pinal C; Mirkin, Chad AAngewandte Chemie (International ed. in English)2010 Apr 263280-9420401880
SlipChip for immunoassays in nanoliter volumes.Liu, Weishan; Chen, Delai; Du, Wenbin; Nichols, Kevin P; Ismagilov, Rustem FAnalytical chemistry2010 Apr 153276-8220334360
Gold nanocages as photothermal transducers for cancer treatment.Chen, Jingyi; Glaus, Charles; Laforest, Richard; Zhang, Qiang; Yang, Miaoxian; Gidding, Michael; Welch, Michael J; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Apr 9811-720225187
Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures.Tsang, John S; Ebert, Margaret S; van Oudenaarden, AlexanderMolecular cell2010 Apr 9140-5320385095
Chromatin signature of embryonic pluripotency is established during genome activation.Vastenhouw, Nadine L; Zhang, Yong; Woods, Ian G; Imam, Farhad; Regev, Aviv; Liu, X Shirley; Rinn, John; Schier, Alexander FNature2010 Apr 8922-620336069
Digital transcriptome profiling from attomole-level RNA samples.Ozsolak, Fatih; Goren, Alon; Gymrek, Melissa; Guttman, Mitchell; Regev, Aviv; Bernstein, Bradley E; Milos, Patrice MGenome research2010 Apr519-2520133332
Activity in the barrel cortex during active behavior and sleep.Vijayan, Sujith; Hale, Greg J; Moore, Christopher I; Brown, Emery N; Wilson, MatthewJournal of neurophysiology2010 Apr2074-8420164403
Expression of the autoimmune susceptibility gene FcRL3 on human regulatory T cells is associated with dysfunction and high levels of programmed cell death-1.Swainson, Louise A; Mold, Jeff E; Bajpai, Urmila D; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2010 Apr 13639-4720190142
Potent and selective photo-inactivation of proteins with peptoid-ruthenium conjugates.Lee, Jiyong; Udugamasooriya, D Gomika; Lim, Hyun-Suk; Kodadek, ThomasNature chemical biology2010 Apr258-6020228793
Context is routinely encoded during emotion perception.Barrett, Lisa Feldman; Kensinger, Elizabeth APsychological science2010 Apr595-920424107
Neural mechanisms of ageing and cognitive decline.Bishop, Nicholas A; Lu, Tao; Yankner, Bruce ANature2010 Mar 25529-3520336135
Navigational decision making in Drosophila thermotaxis.Luo, Linjiao; Gershow, Marc; Rosenzweig, Mark; Kang, Kyeongjin; Fang-Yen, Christopher; Garrity, Paul A; Samuel, Aravinthan D TThe Journal of neuroscience : the official journal of the Society for Neuroscience2010 Mar 244261-7220335462
Gene duplication and the evolution of ribosomal protein gene regulation in yeast.Wapinski, Ilan; Pfiffner, Jenna; French, Courtney; Socha, Amanda; Thompson, Dawn Anne; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2010 Mar 235505-1020212107
Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor.Fosbrink, Matthew; Aye-Han, Nwe-Nwe; Cheong, Raymond; Levchenko, Andre; Zhang, JinProceedings of the National Academy of Sciences of the United States of America2010 Mar 235459-6420212108
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.Ma, Li-Jun; van der Does, H Charlotte; Borkovich, Katherine A; Coleman, Jeffrey J; Daboussi, Marie-Josee; Di Pietro, Antonio; Dufresne, Marie; Freitag, Michael; Grabherr, Manfred; Henrissat, Bernard; Houterman, Petra M; Kang, Seogchan; Shim, Won-Bo; WolosNature2010 Mar 18367-7320237561
Picomole-scale characterization of protein stability and function by quantitative cysteine reactivity.Isom, Daniel G; Vardy, Eyal; Oas, Terrence G; Hellinga, Homme WProceedings of the National Academy of Sciences of the United States of America2010 Mar 164908-1320194783
Telomere elongation in induced pluripotent stem cells from dyskeratosis congenita patients.Agarwal, Suneet; Loh, Yuin-Han; McLoughlin, Erin M; Huang, Junjiu; Park, In-Hyun; Miller, Justine D; Huo, Hongguang; Okuka, Maja; Dos Reis, Rosana Maria; Loewer, Sabine; Ng, Huck-Hui; Keefe, David L; Goldman, Frederick D; Klingelhutz, Aloysius J; Liu, LinNature2010 Mar 11292-620164838
Graphene and nanowire transistors for cellular interfaces and electrical recording.Cohen-Karni, Tzahi; Qing, Quan; Li, Qiang; Fang, Ying; Lieber, Charles MNano letters2010 Mar 101098-10220136098
A simple spectroscopic method for differentiating cellular uptakes of gold nanospheres and nanorods from their mixtures.Cho, Eun Chul; Liu, Yang; Xia, YounanAngewandte Chemie (International ed. in English)2010 Mar 81976-8020146292
Total synthesis of the polycyclic fungal metabolite (+/-)-communesin F.Liu, Peng; Seo, Jae Hong; Weinreb, Steven MAngewandte Chemie (International ed. in English)2010 Mar 82000-320175174
Dissolving Ag from Au-Ag Alloy Nanoboxes with H(2)O(2): A Method for Both Tailoring the Optical Properties and Measuring the H(2)O(2) Concentration.Zhang, Qiang; Cobley, Claire M; Zeng, Jie; Wen, Long-Ping; Chen, Jingyi; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces2010 Mar 56396-640020495675
Estimated autism risk, older reproductive age, and parameterization.Durkin, Maureen S; Maenner, Matthew J; Newschaffer, Craig JAmerican journal of public health2010 Mar389-90; author reply 39020075308
Stimulus onset quenches neural variability: a widespread cortical phenomenon.Churchland, Mark M; Yu, Byron M; Cunningham, John P; Sugrue, Leo P; Cohen, Marlene R; Corrado, Greg S; Newsome, William T; Clark, Andrew M; Hosseini, Paymon; Scott, Benjamin B; Bradley, David C; Smith, Matthew A; Kohn, Adam; Movshon, J Anthony; Armstrong,Nature neuroscience2010 Mar369-7820173745
Microfluidic stochastic confinement enhances analysis of rare cells by isolating cells and creating high density environments for control of diffusible signals.Vincent, Meghan E; Liu, Weishan; Haney, Elizabeth B; Ismagilov, Rustem FChemical Society reviews2010 Mar974-8420179819
Oligonucleotide-based tools for studying zebrafish development.Shestopalov, Ilya A; Chen, James KZebrafish2010 Mar31-4020392138
Social influence and the autism epidemic.Liu, Ka-Yuet; King, Marissa; Bearman, Peter SAJS; American journal of sociology2010 Mar1387-43420503647
The evolution of human genetic and phenotypic variation in Africa.Campbell, Michael C; Tishkoff, Sarah ACurrent biology : CB2010 Feb 23R166-7320178763
The effects of size, shape, and surface functional group of gold nanostructures on their adsorption and internalization by cells.Cho, Eun Chul; Au, Leslie; Zhang, Qiang; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2010 Feb 22517-2220029850
Variability in gene expression underlies incomplete penetrance.Raj, Arjun; Rifkin, Scott A; Andersen, Erik; van Oudenaarden, AlexanderNature2010 Feb 18913-820164922
Understanding the SERS Effects of Single Silver Nanoparticles and Their Dimers, One at a Time.Rycenga, Matthew; Camargo, Pedro H C; Li, Weiyang; Moran, Christine H; Xia, YounanThe journal of physical chemistry letters2010 Feb 18696-70320368749
Nature's molecular sponges: small heat shock proteins grow into their chaperone roles.Eyles, Stephen J; Gierasch, Lila MProceedings of the National Academy of Sciences of the United States of America2010 Feb 162727-820133678
Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis.Kohanski, Michael A; DePristo, Mark A; Collins, James JMolecular cell2010 Feb 12311-2020159551
Subthreshold regime has the optimal sensitivity for nanowire FET biosensors.Gao, Xuan P A; Zheng, Gengfeng; Lieber, Charles MNano letters2010 Feb 10547-5219908823
Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates.Kim, Sangjin; Schroeder, Charles M; Xie, X SunneyJournal of molecular biology2010 Feb 5995-100619968999
Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells.Shalek, Alex K; Robinson, Jacob T; Karp, Ethan S; Lee, Jin Seok; Ahn, Dae-Ro; Yoon, Myung-Han; Sutton, Amy; Jorgolli, Marsela; Gertner, Rona S; Gujral, Taranjit S; MacBeath, Gavin; Yang, Eun Gyeong; Park, HongkunProceedings of the National Academy of Sciences of the United States of America2010 Feb 21870-520080678
Nanowire transistor arrays for mapping neural circuits in acute brain slices.Qing, Quan; Pal, Sumon K; Tian, Bozhi; Duan, Xiaojie; Timko, Brian P; Cohen-Karni, Tzahi; Murthy, Venkatesh N; Lieber, Charles MProceedings of the National Academy of Sciences of the United States of America2010 Feb 21882-720133836
Novelty as a dimension in the affective brain.Weierich, Mariann R; Wright, Christopher I; Negreira, Alyson; Dickerson, Brad C; Barrett, Lisa FeldmanNeuroImage2010 Feb 12871-819796697
A bioreactor for in-cell protein NMR.Sharaf, Naima G; Barnes, Christopher O; Charlton, Lisa M; Young, Gregory B; Pielak, Gary JJournal of magnetic resonance (San Diego, Calif. : 1997)2010 Feb140-619910228
Genome editing with modularly assembled zinc-finger nucleases.Kim, Jin-Soo; Lee, Hyung Joo; Carroll, DanaNature methods2010 Feb91; author reply 91-220111032
IFN-alpha-induced upregulation of CCR5 leads to expanded HIV tropism in vivo.Stoddart, Cheryl A; Keir, Mary E; McCune, Joseph MPLoS pathogens2010 Febe100076620174557
Seamless bead to microarray screening: rapid identification of the highest affinity protein ligands from large combinatorial libraries.Astle, John M; Simpson, Levi S; Huang, Yong; Reddy, M Muralidhar; Wilson, Rosemary; Connell, Steven; Wilson, Johnnie; Kodadek, ThomasChemistry & biology2010 Jan 2938-4520142039
Quantifying the cellular uptake of antibody-conjugated Au nanocages by two-photon microscopy and inductively coupled plasma mass spectrometry.Au, Leslie; Zhang, Qiang; Cobley, Claire M; Gidding, Michael; Schwartz, Andrea G; Chen, Jingyi; Xia, YounanACS nano2010 Jan 2635-4219954236
Controlling destiny through chemistry: small-molecule regulators of cell fate.Firestone, Ari J; Chen, James KACS chemical biology2010 Jan 1515-3420000447
User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.Li, Liang; Du, Wenbin; Ismagilov, RustemJournal of the American Chemical Society2010 Jan 13106-1120000708
Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.Li, Liang; Du, Wenbin; Ismagilov, Rustem FJournal of the American Chemical Society2010 Jan 13112-920000709
Protein (19)F NMR in Escherichia coli.Li, Conggang; Wang, Gui-Fang; Wang, Yaqiang; Creager-Allen, Rachel; Lutz, Evan A; Scronce, Heidi; Slade, Kristin M; Ruf, Rebecca A S; Mehl, Ryan A; Pielak, Gary JJournal of the American Chemical Society2010 Jan 13321-720050707
Genome-wide patterns of population structure and admixture in West Africans and African Americans.Bryc, Katarzyna; Auton, Adam; Nelson, Matthew R; Oksenberg, Jorge R; Hauser, Stephen L; Williams, Scott; Froment, Alain; Bodo, Jean-Marie; Wambebe, Charles; Tishkoff, Sarah A; Bustamante, Carlos DProceedings of the National Academy of Sciences of the United States of America2010 Jan 12786-9120080753
Optical Properties of Nested Pyramidal Nanoshells.Lin, Julia Y; Hasan, Warefta; Yang, Jiun-Chan; Odom, Teri WThe journal of physical chemistry. C, Nanomaterials and interfaces2010 Jan 87432-743520431688
Mechanics of the F-actin cytoskeleton.Stricker, Jonathan; Falzone, Tobias; Gardel, Margaret LJournal of biomechanics2010 Jan 59-1419913792
Synthesis of gold microplates using bovine serum albumin as a reductant and a stabilizer.Au, Leslie; Lim, Byungkwon; Colletti, Peter; Jun, Young-Shin; Xia, YounanChemistry, an Asian journal2010 Jan 4123-919967737
Mechanical integration of actin and adhesion dynamics in cell migration.Gardel, Margaret L; Schneider, Ian C; Aratyn-Schaus, Yvonne; Waterman, Clare MAnnual review of cell and developmental biology2010315-3319575647
Insulin causes hyperthermia by direct inhibition of warm-sensitive neurons.Sanchez-Alavez, Manuel; Tabarean, Iustin V; Osborn, Olivia; Mitsukawa, Kayo; Schaefer, Jean; Dubins, Jeffrey; Holmberg, Kristina H; Klein, Izabella; Klaus, Joe; Gomez, Luis F; Kolb, Hartmuth; Secrest, James; Jochems, Jeanine; Myashiro, Kevin; Buckley, PetDiabetes2010 Jan43-5019846801
Generation of functional human hepatic endoderm from human induced pluripotent stem cells.Sullivan, Gareth J; Hay, David C; Park, In-Hyun; Fletcher, Judy; Hannoun, Zara; Payne, Catherine M; Dalgetty, Donna; Black, James R; Ross, James A; Samuel, Kay; Wang, Gang; Daley, George Q; Lee, Je-Hyuk; Church, George M; Forbes, Stuart J; Iredale, John PHepatology (Baltimore, Md.)2010 Jan329-3519877180
Autologous blood cell therapies from pluripotent stem cells.Lengerke, Claudia; Daley, George QBlood reviews2010 Jan27-3719910091
State-space algorithms for estimating spike rate functions.Smith, Anne C; Scalon, Joao D; Wirth, Sylvia; Yanike, Marianna; Suzuki, Wendy A; Brown, Emery NComputational intelligence and neuroscience201042653919911062
Etching and dimerization: a simple and versatile route to dimers of silver nanospheres with a range of sizes.Li, Weiyang; Camargo, Pedro H C; Au, Leslie; Zhang, Qiang; Rycenga, Matthew; Xia, YounanAngewandte Chemie (International ed. in English)2010164-819943304
Targeting device therapy: genomics of sudden death.Frangiskakis, J Michael; London, BarryHeart failure clinics2010 Jan93-10019945065
Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.Goren, Alon; Ozsolak, Fatih; Shoresh, Noam; Ku, Manching; Adli, Mazhar; Hart, Chris; Gymrek, Melissa; Zuk, Or; Regev, Aviv; Milos, Patrice M; Bernstein, Bradley ENature methods2010 Jan47-919946276
Cytomegalovirus-specific T cells persist at very high levels during long-term antiretroviral treatment of HIV disease.Naeger, David M; Martin, Jeffrey N; Sinclair, Elizabeth; Hunt, Peter W; Bangsberg, David R; Hecht, Frederick; Hsue, Priscilla; McCune, Joseph M; Deeks, Steven GPloS one2010e888620126452
Phylogenetic analysis of developmental and postnatal mouse cell lineages.Salipante, Stephen J; Kas, Arnold; McMonagle, Eva; Horwitz, Marshall SEvolution & development2010 Jan-Feb84-9420156285
Measuring the SERS Enhancement Factors of Dimers with Different Structures Constructed from Silver Nanocubes.Camargo, Pedro H C; Au, Leslie; Rycenga, Matthew; Li, Weiyang; Xia, YounanChemical physics letters2010 Jan304-30820209069
The role of nucleosome positioning in the evolution of gene regulation.Tsankov, Alexander M; Thompson, Dawn Anne; Socha, Amanda; Regev, Aviv; Rando, Oliver JPLoS biology2010e100041420625544
Electrospun nanofibers for neural tissue engineering.Xie, Jingwei; MacEwan, Matthew R; Schwartz, Andrea G; Xia, YounanNanoscale2010 Jan35-4420648362
Engineering single Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection system.Thibodeau-Beganny, Stacey; Maeder, Morgan L; Joung, J KeithMethods in molecular biology (Clifton, N.J.)201031-5020680826
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species.Yassour, Moran; Pfiffner, Jenna; Levin, Joshua Z; Adiconis, Xian; Gnirke, Andreas; Nusbaum, Chad; Thompson, Dawn-Anne; Friedman, Nir; Regev, AvivGenome biology2010R8720796282
Reconstructing gene histories in Ascomycota fungi.Wapinski, Ilan; Regev, AvivMethods in enzymology2010447-8520946821
Living the high life: high-altitude adaptation.Scheinfeldt, Laura B; Tishkoff, Sarah AGenome biology201013320979669
Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences.Sander, Jeffry D; Reyon, Deepak; Maeder, Morgan L; Foley, Jonathan E; Thibodeau-Beganny, Stacey; Li, Xiaohong; Regan, Maureen R; Dahlborg, Elizabeth J; Goodwin, Mathew J; Fu, Fengli; Voytas, Daniel F; Joung, J Keith; Dobbs, DrenaBMC bioinformatics201054321044337
Point process time-frequency analysis of respiratory sinus arrhythmia under altered respiration dynamics.Kodituwakku, Sandun; Lazar, Sara W; Indic, Premananda; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20101622-521096135
The Fitzhugh-Nagumo model: Firing modes with time-varying parameters & parameter estimation.Faghih, Rose T; Savla, Ketan; Dahleh, Munther A; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20104116-921096631
Psychophysiological signals associated with affective states.Mauri, Maurizio; Magagnin, Valentina; Cipresso, Pietro; Mainardi, Luca; Brown, Emery N; Cerutti, Sergio; Villamira, Marco; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20103563-621096828
A differential autoregressive modeling approach within a point process framework for non-stationary heartbeat intervals analysis.Chen, Zhe; Purdon, Patrick L; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20103567-7021096829
Low-dimensional neural features predict muscle EMG signals.Rivera-Alvidrez, Zuley; Kalmar, Rachel S; Ryu, Stephen I; Shenoy, Krishna VConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20106027-3321097116
Association of the small GTPase Rheb with the NMDA receptor subunit NR3A.Sucher, Nikolaus J; Yu, Eric; Chan, Shing Fai; Miri, Mitra; Lee, Benjamin J; Xiao, Bo; Worley, Paul F; Jensen, Frances ENeuro-Signals2010203-921135540
Preparation of complaint matrices for quantifying cellular contraction.Aratyn-Schaus, Yvonne; Oakes, Patrick W; Stricker, Jonathan; Winter, Stephen P; Gardel, Margaret LJournal of visualized experiments : JoVE201021178972
CXCR6, a newly defined biomarker of tissue-specific stem cell asymmetric self-renewal, identifies more aggressive human melanoma cancer stem cells.Taghizadeh, Rouzbeh; Noh, Minsoo; Huh, Yang Hoon; Ciusani, Emilio; Sigalotti, Luca; Maio, Michele; Arosio, Beatrice; Nicotra, Maria R; Natali, PierGiorgio; Sherley, James L; La Porta, Caterina A MPloS one2010e1518321203549
A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.Shapira, Sagi D; Gat-Viks, Irit; Shum, Bennett O V; Dricot, Amelie; de Grace, Marciela M; Wu, Liguo; Gupta, Piyush B; Hao, Tong; Silver, Serena J; Root, David E; Hill, David E; Regev, Aviv; Hacohen, NirCell2009 Dec 241255-6720064372
A feeling for the numbers in biology.Phillips, Rob; Milo, RonProceedings of the National Academy of Sciences of the United States of America2009 Dec 2221465-7120018695
Fungal regulatory evolution: cis and trans in the balance.Thompson, Dawn Anne; Regev, AvivFEBS letters2009 Dec 173959-6519914250
Growth landscape formed by perception and import of glucose in yeast.Youk, Hyun; van Oudenaarden, AlexanderNature2009 Dec 17875-920016593
Metal-polymer hybrid colloidal particles with an eccentric structure.Ohnuma, Akira; Cho, Eun Chul; Jiang, Majiong; Ohtani, Bunsho; Xia, YounanLangmuir : the ACS journal of surfaces and colloids2009 Dec 1513880-719621917
Hydroxyurea induces hydroxyl radical-mediated cell death in Escherichia coli.Davies, Bryan W; Kohanski, Michael A; Simmons, Lyle A; Winkler, Jonathan A; Collins, James J; Walker, Graham CMolecular cell2009 Dec 11845-6020005847
Revealing global regulatory perturbations across human cancers.Goodarzi, Hani; Elemento, Olivier; Tavazoie, SaeedMolecular cell2009 Dec 11900-1120005852
Plant science. DNA binding made easy.Voytas, Daniel F; Joung, J KeithScience (New York, N.Y.)2009 Dec 111491-220007890
Clonal expansions in ulcerative colitis identify patients with neoplasia.Salk, Jesse J; Salipante, Stephen J; Risques, Rosa Ana; Crispin, David A; Li, Lin; Bronner, Mary P; Brentnall, Teresa A; Rabinovitch, Peter S; Horwitz, Marshall S; Loeb, Lawrence AProceedings of the National Academy of Sciences of the United States of America2009 Dec 820871-619926851
Facile synthesis of gold icosahedra in an aqueous solution by reacting HAuCl(4) with N-vinyl pyrrolidone.Yavuz, Mustafa S; Li, Weiyang; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)2009 Dec 713181-719876970
Altered development of glutamatergic synapses in layer V pyramidal neurons in NR3A knockout mice.Zhou, Chengwen; Jensen, Frances E; Sucher, Nikolaus JMolecular and cellular neurosciences2009 Dec419-2619782137
From elements to modules: regulatory evolution in Ascomycota fungi.Wohlbach, Dana J; Thompson, Dawn Anne; Gasch, Audrey P; Regev, AvivCurrent opinion in genetics & development2009 Dec571-819879128
Gold nanocages covered by smart polymers for controlled release with near-infrared light.Yavuz, Mustafa S; Cheng, Yiyun; Chen, Jingyi; Cobley, Claire M; Zhang, Qiang; Rycenga, Matthew; Xie, Jingwei; Kim, Chulhong; Song, Kwang H; Schwartz, Andrea G; Wang, Lihong V; Xia, YounanNature materials2009 Dec935-919881498
Single-crystalline kinked semiconductor nanowire superstructures.Tian, Bozhi; Xie, Ping; Kempa, Thomas J; Bell, David C; Lieber, Charles MNature nanotechnology2009 Dec824-919893521
Caenorhabditis elegans: a model system for systems neuroscience.Sengupta, Piali; Samuel, Aravinthan D TCurrent opinion in neurobiology2009 Dec637-4319896359
Synthetic biology: understanding biological design from synthetic circuits.Mukherji, Shankar; van Oudenaarden, AlexanderNature reviews. Genetics2009 Dec859-7119898500
Neonatal seizures: an update on mechanisms and management.Jensen, Frances EClinics in perinatology2009 Dec881-900, vii19944840
Next-generation synthetic gene networks.Lu, Timothy K; Khalil, Ahmad S; Collins, James JNature biotechnology2009 Dec1139-5020010597
Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold.Cuneo, Matthew J; Beese, Lorena S; Hellinga, Homme WThe Journal of biological chemistry2009 Nov 2733217-2319801540
Isolation of antagonists of antigen-specific autoimmune T cell proliferation.Gocke, Anne R; Udugamasooriya, D Gomika; Archer, Chase T; Lee, Jiyong; Kodadek, ThomasChemistry & biology2009 Nov 251133-919942136
Identification and characterization of a small molecule inhibitor of formin-mediated actin assembly.Rizvi, Syed A; Neidt, Erin M; Cui, Jiayue; Feiger, Zach; Skau, Colleen T; Gardel, Margaret L; Kozmin, Sergey A; Kovar, David RChemistry & biology2009 Nov 251158-6819942139
The many faces of repolarization instability: which one is prognostic?Shusterman, Vladimir; Lampert, Rachel; London, BarryJournal of electrocardiology2009 Nov-Dec511-619717165
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas.Bass, Adam J; Watanabe, Hideo; Mermel, Craig H; Yu, Soyoung; Perner, Sven; Verhaak, Roel G; Kim, So Young; Wardwell, Leslie; Tamayo, Pablo; Gat-Viks, Irit; Ramos, Alex H; Woo, Michele S; Weir, Barbara A; Getz, Gad; Beroukhim, Rameen; O'Kelly, Michael; DutNature genetics2009 Nov1238-4219801978
Regulating immune response using polyvalent nucleic acid-gold nanoparticle conjugates.Massich, Matthew D; Giljohann, David A; Seferos, Dwight S; Ludlow, Louise E; Horvath, Curt M; Mirkin, Chad AMolecular pharmaceutics2009 Nov-Dec1934-4019810673
Post-reductionist protein science, or putting Humpty Dumpty back together again.Gierasch, Lila M; Gershenson, AnneNature chemical biology2009 Nov774-719841622
Measuring the surface-enhanced Raman scattering enhancement factors of hot spots formed between an individual Ag nanowire and a single Ag nanocube.Camargo, Pedro H C; Cobley, Claire M; Rycenga, Matthew; Xia, YounanNanotechnology2009 Oct 2843402019801754
A Bayesian statistical analysis of behavioral facilitation associated with deep brain stimulation.Smith, Anne C; Shah, Sudhin A; Hudson, Andrew E; Purpura, Keith P; Victor, Jonathan D; Brown, Emery N; Schiff, Nicholas DJournal of neuroscience methods2009 Oct 15267-7619576932
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.Amit, Ido; Garber, Manuel; Chevrier, Nicolas; Leite, Ana Paula; Donner, Yoni; Eisenhaure, Thomas; Guttman, Mitchell; Grenier, Jennifer K; Li, Weibo; Zuk, Or; Schubert, Lisa A; Birditt, Brian; Shay, Tal; Goren, Alon; Zhang, Xiaolan; Smith, Zachary; DeeringScience (New York, N.Y.)2009 Oct 9257-6319729616
Translational and rotational diffusion of a small globular protein under crowded conditions.Li, Conggang; Wang, Yaqiang; Pielak, Gary JThe journal of physical chemistry. B2009 Oct 813390-219791823
Affective learning enhances activity and functional connectivity in early visual cortex.Damaraju, Eswar; Huang, Yang-Ming; Barrett, Lisa Feldman; Pessoa, LuizNeuropsychologia2009 Oct2480-719410587
Role of reactive oxygen species in antibiotic action and resistance.Dwyer, Daniel J; Kohanski, Michael A; Collins, James JCurrent opinion in microbiology2009 Oct482-919647477
Diagnostic change and the increased prevalence of autism.King, Marissa; Bearman, PeterInternational journal of epidemiology2009 Oct1224-3419737791
The importance of being earnestly selfish.Cheroutre, Hilde; Mucida, Daniel; Lambolez, FlorenceNature immunology2009 Oct1047-919767722
She's emotional. He's having a bad day: attributional explanations for emotion stereotypes.Barrett, Lisa Feldman; Bliss-Moreau, ElizaEmotion (Washington, D.C.)2009 Oct649-5819803587
Fabrication of Microbeads with a Controllable Hollow Interior and Porous Wall Using a Capillary Fluidic Device.Choi, Sung-Wook; Zhang, Yu; Xia, YounanAdvanced functional materials2009 Sep 232943-294920191106
A SERS study of the molecular structure of alkanethiol monolayers on Ag nanocubes in the presence of aqueous glucose.Rycenga, Matthew; McLellan, Joseph M; Xia, YounanChemical physics letters2009 Sep 22166-17120160847
19F NMR studies of alpha-synuclein conformation and fibrillation.Li, Conggang; Lutz, Evan A; Slade, Kristin M; Ruf, Rebecca A S; Wang, Gui-Fang; Pielak, Gary JBiochemistry2009 Sep 158578-8419655784
Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics.Gusarov, Ivan; Shatalin, Konstantin; Starodubtseva, Marina; Nudler, EvgenyScience (New York, N.Y.)2009 Sep 111380-419745150
STIM1 and calmodulin interact with Orai1 to induce Ca2+-dependent inactivation of CRAC channels.Mullins, Franklin M; Park, Chan Young; Dolmetsch, Ricardo E; Lewis, Richard SProceedings of the National Academy of Sciences of the United States of America2009 Sep 815495-50019706428
Water-soluble macrocycles synthesized via the weak-link approach.Wiester, Michael J; Mirkin, Chad AInorganic chemistry2009 Sep 78054-619637852
Estimated autism risk and older reproductive age.King, Marissa D; Fountain, Christine; Dakhlallah, Diana; Bearman, Peter SAmerican journal of public health2009 Sep1673-919608957
Aptamer nano-flares for molecular detection in living cells.Zheng, Dan; Seferos, Dwight S; Giljohann, David A; Patel, Pinal C; Mirkin, Chad ANano letters2009 Sep3258-6119645478
Hematopoietic development from human induced pluripotent stem cells.Lengerke, Claudia; Grauer, Matthias; Niebuhr, Nina I; Riedt, Tamara; Kanz, Lothar; Park, In-Hyun; Daley, George QAnnals of the New York Academy of Sciences2009 Sep219-2719796250
Production of Ag nanocubes on a scale of 0.1 g per batch by protecting the NaHS-mediated polyol synthesis with argon.Zhang, Qiang; Cobley, Claire; Au, Leslie; McKiernan, Maureen; Schwartz, Andrea; Wen, Long-Ping; Chen, Jingyi; Xia, YounanACS applied materials & interfaces2009 Sep2044-820305725
Generating coherent patterns of activity from chaotic neural networks.Sussillo, David; Abbott, L FNeuron2009 Aug 27544-5719709635
Nano-flares for mRNA regulation and detection.Prigodich, Andrew E; Seferos, Dwight S; Massich, Matthew D; Giljohann, David A; Lane, Brandon C; Mirkin, Chad AACS nano2009 Aug 252147-5219702321
SlipChip.Du, Wenbin; Li, Liang; Nichols, Kevin P; Ismagilov, Rustem FLab on a chip2009 Aug 212286-9219636458
A role for Lin28 in primordial germ-cell development and germ-cell malignancy.West, Jason A; Viswanathan, Srinivas R; Yabuuchi, Akiko; Cunniff, Kerianne; Takeuchi, Ayumu; Park, In-Hyun; Sero, Julia E; Zhu, Hao; Perez-Atayde, Antonio; Frazier, A Lindsay; Surani, M Azim; Daley, George QNature2009 Aug 13909-1319578360
Morphology and interaction between lipid domains.Ursell, Tristan S; Klug, William S; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2009 Aug 1113301-619620730
Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement.Liu, Weishan; Kim, Hyun Jung; Lucchetta, Elena M; Du, Wenbin; Ismagilov, Rustem FLab on a chip2009 Aug 72153-6219606291
Modelling to contain pandemics.Epstein, Joshua MNature2009 Aug 668719661897
Colloidal hollow spheres of conducting polymers with smooth surface and uniform, controllable sizes.Bai, Meng-Yi; Cheng, Ya-Jian; Wickline, Samuel A; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2009 Aug 31747-5219384880
Global discovery of adaptive mutations.Goodarzi, Hani; Hottes, Alison K; Tavazoie, SaeedNature methods2009 Aug581-319597501
Protein occupancy landscape of a bacterial genome.Vora, Tiffany; Hottes, Alison K; Tavazoie, SaeedMolecular cell2009 Jul 31247-5319647521
Trajectory approach to two-state kinetics of single particles on sculpted energy landscapes.Wu, David; Ghosh, Kingshuk; Inamdar, Mandar; Lee, Heun Jin; Fraser, Scott; Dill, Ken; Phillips, RobPhysical review letters2009 Jul 3105060319792475
Probing the surface-enhanced Raman scattering properties of Au-Ag nanocages at two different excitation wavelengths.Rycenga, Matthew; Hou, Kirk K; Cobley, Claire M; Schwartz, Andrea G; Camargo, Pedro H C; Xia, YounanPhysical chemistry chemical physics : PCCP2009 Jul 285903-819588011
Transcriptional regulatory circuits: predicting numbers from alphabets.Kim, Harold D; Shay, Tal; O'Shea, Erin K; Regev, AvivScience (New York, N.Y.)2009 Jul 24429-3219628860
Conductive Core-Sheath Nanofibers and Their Potential Application in Neural Tissue Engineering.Xie, Jingwei; Macewan, Matthew R; Willerth, Stephanie M; Li, Xiaoran; Moran, Daniel W; Sakiyama-Elbert, Shelly E; Xia, YounanAdvanced functional materials2009 Jul 242312-231819830261
Carborane-based pincers: synthesis and structure of SeBSe and SBS Pd(II) complexes.Spokoyny, Alexander M; Reuter, Matthew G; Stern, Charlotte L; Ratner, Mark A; Seideman, Tamar; Mirkin, Chad AJournal of the American Chemical Society2009 Jul 159482-319583431
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.Khalil, Ahmad M; Guttman, Mitchell; Huarte, Maite; Garber, Manuel; Raj, Arjun; Rivea Morales, Dianali; Thomas, Kelly; Presser, Aviva; Bernstein, Bradley E; van Oudenaarden, Alexander; Regev, Aviv; Lander, Eric S; Rinn, John LProceedings of the National Academy of Sciences of the United States of America2009 Jul 1411667-7219571010
Bone-marrow adipocytes as negative regulators of the haematopoietic microenvironment.Naveiras, Olaia; Nardi, Valentina; Wenzel, Pamela L; Hauschka, Peter V; Fahey, Frederic; Daley, George QNature2009 Jul 9259-6319516257
In vivo profiles in malaria are consistent with a novel physiological state.Wirth, Dyann; Daily, Johanna; Winzeler, Elizabeth; Mesirov, Jill P; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2009 Jul 7E70; author reply E71-219570993
Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells.Zou, Jizhong; Maeder, Morgan L; Mali, Prashant; Pruett-Miller, Shondra M; Thibodeau-Beganny, Stacey; Chou, Bin-Kuan; Chen, Guibin; Ye, Zhaohui; Park, In-Hyun; Daley, George Q; Porteus, Matthew H; Joung, J Keith; Cheng, LinzhaoCell stem cell2009 Jul 297-11019540188
Assessment of autonomic control and respiratory sinus arrhythmia using point process models of human heart beat dynamics.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoIEEE transactions on bio-medical engineering2009 Jul1791-80219272971
Discrete- and continuous-time probabilistic models and algorithms for inferring neuronal UP and DOWN states.Chen, Zhe; Vijayan, Sujith; Barbieri, Riccardo; Wilson, Matthew A; Brown, Emery NNeural computation2009 Jul1797-86219323637
Persistent systemic inflammation and atypical enterocolitis in patients with NEMO syndrome.Cheng, Laurence E; Kanwar, Bittoo; Tcheurekdjian, Haig; Grenert, James P; Muskat, Mica; Heyman, Melvin B; McCune, Joseph M; Wara, Diane WClinical immunology (Orlando, Fla.)2009 Jul124-3119375390
Lin28 promotes transformation and is associated with advanced human malignancies.Viswanathan, Srinivas R; Powers, John T; Einhorn, William; Hoshida, Yujin; Ng, Tony L; Toffanin, Sara; O'Sullivan, Maureen; Lu, Jun; Phillips, Letha A; Lockhart, Victoria L; Shah, Samar P; Tanwar, Pradeep S; Mermel, Craig H; Beroukhim, Rameen; Azam, MohamNature genetics2009 Jul843-819483683
Nanofiber scaffolds with gradations in mineral content for mimicking the tendon-to-bone insertion site.Li, Xiaoran; Xie, Jingwei; Lipner, Justin; Yuan, Xiaoyan; Thomopoulos, Stavros; Xia, YounanNano letters2009 Jul2763-819537737
Epileptogenesis in the immature brain: emerging mechanisms.Rakhade, Sanjay N; Jensen, Frances ENature reviews. Neurology2009 Jul380-9119578345
The Future of Psychology: Connecting Mind to Brain.Barrett, Lisa FeldmanPerspectives on psychological science : a journal of the Association for Psychological Science2009 Jul 1326-33919844601
The molecular dating game: an antibody heavy chain hangs loose with a chaperone while waiting for its life partner.Hebert, Daniel N; Gierasch, Lila MMolecular cell2009 Jun 26635-619560414
Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment.Peterson, Eric L; Kondev, Jane; Theriot, Julie A; Phillips, RobBioinformatics (Oxford, England)2009 Jun 11356-6219351620
Valence focus and self-esteem lability: reacting to hedonic cues in the social environment.Pietromonaco, Paula R; Barrett, Lisa FeldmanEmotion (Washington, D.C.)2009 Jun406-1819485618
Structural adaptations that modulate monosaccharide, disaccharide, and trisaccharide specificities in periplasmic maltose-binding proteins.Cuneo, Matthew J; Changela, Anita; Beese, Lorena S; Hellinga, Homme WJournal of molecular biology2009 May 29157-6619361522
Synthetic gene networks that count.Friedland, Ari E; Lu, Timothy K; Wang, Xiao; Shi, David; Church, George; Collins, James JScience (New York, N.Y.)2009 May 291199-20219478183
Measuring the Optical Absorption Cross Sections of Au-Ag Nanocages and Au Nanorods by Photoacoustic Imaging.Cho, Eun Chul; Kim, Chulhong; Zhou, Fei; Cobley, Claire M; Song, Kwang Hyun; Chen, Jingyi; Li, Zhi-Yuhan; Wang, Lihong V; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces2009 May 289023-902819680423
Neurite outgrowth on nanofiber scaffolds with different orders, structures, and surface properties.Xie, Jingwei; MacEwan, Matthew R; Li, Xiaoran; Sakiyama-Elbert, Shelly E; Xia, YounanACS nano2009 May 261151-919397333
High-frequency modification of plant genes using engineered zinc-finger nucleases.Townsend, Jeffrey A; Wright, David A; Winfrey, Ronnie J; Fu, Fengli; Maeder, Morgan L; Joung, J Keith; Voytas, Daniel FNature2009 May 21442-519404258
Emerging roles for lipids in shaping membrane-protein function.Phillips, Rob; Ursell, Tristan; Wiggins, Paul; Sens, PierreNature2009 May 21379-8519458714
See it with feeling: affective predictions during object perception.Barrett, L F; Bar, MoshePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2009 May 121325-3419528014
High-throughput sequencing of the zebrafish antibody repertoire.Weinstein, Joshua A; Jiang, Ning; White 3rd, Richard A; Fisher, Daniel S; Quake, Stephen RScience (New York, N.Y.)2009 May 8807-1019423829
Transcriptome transfer produces a predictable cellular phenotype.Sul, Jai-Yoon; Wu, Chia-wen K; Zeng, Fanyi; Jochems, Jeanine; Lee, Miler T; Kim, Tae Kyung; Peritz, Tiina; Buckley, Peter; Cappelleri, David J; Maronski, Margaret; Kim, Minsun; Kumar, Vijay; Meaney, David; Kim, Junhyong; Eberwine, JamesProceedings of the National Academy of Sciences of the United States of America2009 May 57624-919380745
HCN hyperpolarization-activated cation channels inhibit EPSPs by interactions with M-type K(+) channels.George, Meena S; Abbott, L F; Siegelbaum, Steven ANature neuroscience2009 May577-8419363490
Diversity-based, model-guided construction of synthetic gene networks with predicted functions.Ellis, Tom; Wang, Xiao; Collins, James JNature biotechnology2009 May465-7119377462
Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli.Amini, Sasan; Goodarzi, Hani; Tavazoie, SaeedPLoS pathogens2009 Maye100043219436718
Selective toxin sequestrants for the treatment of bacterial infections.Simpson, Levi S; Burdine, Lyle; Dutta, Amal K; Feranchak, Andrew P; Kodadek, ThomasJournal of the American Chemical Society2009 Apr 295760-219351156
Surface-enhanced Raman scattering: comparison of three different molecules on single-crystal nanocubes and nanospheres of silver.Rycenga, Matthew; Kim, Moon Ho; Camargo, Pedro H C; Cobley, Claire; Li, Zhi-Yuan; Xia, YounanThe journal of physical chemistry. A2009 Apr 233932-919175302
Optical properties of anisotropic core-shell pyramidal particles.Sweeney, Christina M; Hasan, Warefta; Nehl, Colleen L; Odom, Teri WThe journal of physical chemistry. A2009 Apr 234265-819290590
Chitosan-Based Inverse Opals: Three-Dimensional Scaffolds with Uniform Pore Structures for Cell Culture.Choi, Sung-Wook; Xie, Jingwei; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2009 Apr 152997-300119710950
Sending signals dynamically.Smock, Robert G; Gierasch, Lila MScience (New York, N.Y.)2009 Apr 10198-20319359576
Quantifying green fluorescent protein diffusion in Escherichia coli by using continuous photobleaching with evanescent illumination.Slade, Kristin M; Steele, Bridgett L; Pielak, Gary J; Thompson, Nancy LThe journal of physical chemistry. B2009 Apr 94837-4519296673
Preparation of uniform microspheres using a simple fluidic device and their crystallization into close-packed lattices.Choi, Sung-Wook; Cheong, In Woo; Kim, Jung-Hyun; Xia, YounanSmall (Weinheim an der Bergstrasse, Germany)2009 Apr454-919189332
Tailoring the structure of nanopyramids for optimal heat generation.Hasan, Warefta; Stender, Christopher L; Lee, Min Hyung; Nehl, Colleen L; Lee, JeunghoonNano letters2009 Apr1555-819271715
Proteoglycan interactions with Sonic Hedgehog specify mitogenic responses.Chan, Jennifer A; Balasubramanian, Srividya; Witt, Rochelle M; Nazemi, Kellie J; Choi, Yoojin; Pazyra-Murphy, Maria F; Walsh, Carolyn O; Thompson, Margaret; Segal, Rosalind ANature neuroscience2009 Apr409-1719287388
From brain formation to plasticity: insights on Otx2 homeoprotein.Sugiyama, Sayaka; Prochiantz, Alain; Hensch, Takao KDevelopment, growth & differentiation2009 Apr369-7719298552
Gating multiple signals through detailed balance of excitation and inhibition in spiking networks.Vogels, Tim P; Abbott, L FNature neuroscience2009 Apr483-9119305402
Trial outcome and associative learning signals in the monkey hippocampus.Wirth, Sylvia; Avsar, Emin; Chiu, Cindy C; Sharma, Varun; Smith, Anne C; Brown, Emery; Suzuki, Wendy ANeuron2009 Mar 26930-4019324001
Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells.Contreras, Xavier; Schweneker, Marc; Chen, Ching-Shih; McCune, Joseph M; Deeks, Steven G; Martin, Jeffrey; Peterlin, B MatijaThe Journal of biological chemistry2009 Mar 136782-919136668
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.Guttman, Mitchell; Amit, Ido; Garber, Manuel; French, Courtney; Lin, Michael F; Feldser, David; Huarte, Maite; Zuk, Or; Carey, Bryce W; Cassady, John P; Cabili, Moran N; Jaenisch, Rudolf; Mikkelsen, Tarjei S; Jacks, Tyler; Hacohen, Nir; Bernstein, BradleyNature2009 Mar 12223-719182780
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.Yassour, Moran; Kaplan, Tommy; Fraser, Hunter B; Levin, Joshua Z; Pfiffner, Jenna; Adiconis, Xian; Schroth, Gary; Luo, Shujun; Khrebtukova, Irina; Gnirke, Andreas; Nusbaum, Chad; Thompson, Dawn-Anne; Friedman, Nir; Regev, AvivProceedings of the National Academy of Sciences of the United States of America2009 Mar 33264-919208812
Gag p27-specific B- and T-cell responses in Simian immunodeficiency virus SIVagm-infected African green monkeys.Lozano Reina, Jose-Manuel; Favre, David; Kasakow, Zeljka; Mayau, Veronique; Nugeyre, Marie-Therese; Ka, Thierno; Faye, Abdourahmane; Miller, Christopher J; Scott-Algara, Daniel; McCune, Joseph M; Barre-Sinoussi, Francoise; Diop, Ousmane M; Muller-Trutwin,Journal of virology2009 Mar2770-719109377
Simultaneous electroencephalography and functional magnetic resonance imaging of general anesthesia.Purdon, Patrick L; Pierce, Eric T; Bonmassar, Giorgio; Walsh, John; Harrell, P Grace; Kwo, Jean; Deschler, Daniel; Barlow, Margaret; Merhar, Rebecca C; Lamus, Camilo; Mullaly, Catherine M; Sullivan, Mary; Maginnis, Sharon; Skoniecki, Debra; Higgins, HelenAnnals of the New York Academy of Sciences2009 Mar61-7019351356
The role radius of curvature plays in thiolated oligonucleotide loading on gold nanoparticles.Hill, Haley D; Millstone, Jill E; Banholzer, Matthew J; Mirkin, Chad AACS nano2009 Feb 24418-2419236080
Gene regulation with polyvalent siRNA-nanoparticle conjugates.Giljohann, David A; Seferos, Dwight S; Prigodich, Andrew E; Patel, Pinal C; Mirkin, Chad AJournal of the American Chemical Society2009 Feb 182072-319170493
Biochemistry on a leash: the roles of tether length and geometry in signal integration proteins.Van Valen, David; Haataja, Mikko; Phillips, RobBiophysical journal2009 Feb 181275-9219217847
Tuning the Thickness and Orientation of Single Au Pyramids for Improved Refractive Index Sensitivities.Lee, Jeunghoon; Hasan, Warefta; Odom, Teri WThe journal of physical chemistry. C, Nanomaterials and interfaces2009 Feb 122205-220720157343
Local cortical tension by myosin II guides 3D endothelial cell branching.Fischer, Robert S; Gardel, Margaret; Ma, Xuefei; Adelstein, Robert S; Waterman, Clare MCurrent biology : CB2009 Feb 10260-519185493
Templated spherical high density lipoprotein nanoparticles.Thaxton, C Shad; Daniel, Weston L; Giljohann, David A; Thomas, Audrey D; Mirkin, Chad AJournal of the American Chemical Society2009 Feb 41384-519133723
Using NMR to distinguish viscosity effects from nonspecific protein binding under crowded conditions.Li, Conggang; Pielak, Gary JJournal of the American Chemical Society2009 Feb 41368-919140727
A facile synthesis of asymmetric hybrid colloidal particles.Ohnuma, Akira; Cho, Eun Chul; Camargo, Pedro H C; Au, Leslie; Ohtani, Bunsho; Xia, YounanJournal of the American Chemical Society2009 Feb 41352-319140763
An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.Sander, Jeffry D; Zaback, Peter; Joung, J Keith; Voytas, Daniel F; Dobbs, DrenaNucleic acids research2009 Feb506-1519056825
Electrical recording from hearts with flexible nanowire device arrays.Timko, Brian P; Cohen-Karni, Tzahi; Yu, Guihua; Qing, Quan; Tian, Bozhi; Lieber, Charles MNano letters2009 Feb914-819170614
Transcriptional profiling in pathogenic and non-pathogenic SIV infections reveals significant distinctions in kinetics and tissue compartmentalization.Lederer, Sharon; Favre, David; Walters, Kathie-Anne; Proll, Sean; Kanwar, Bittoo; Kasakow, Zeljka; Baskin, Carole R; Palermo, Robert; McCune, Joseph M; Katze, Michael GPLoS pathogens2009 Febe100029619214219
Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection.Favre, David; Lederer, Sharon; Kanwar, Bittoo; Ma, Zhong-Min; Proll, Sean; Kasakow, Zeljka; Mold, Jeff; Swainson, Louise; Barbour, Jason D; Baskin, Carole R; Palermo, Robert; Pandrea, Ivona; Miller, Christopher J; Katze, Michael G; McCune, Joseph MPLoS pathogens2009 Febe100029519214220
Redox-activating dip-pen nanolithography (RA-DPN).Braunschweig, Adam B; Senesi, Andrew J; Mirkin, Chad AJournal of the American Chemical Society2009 Jan 28922-319128060
A network biology approach to aging in yeast.Lorenz, David R; Cantor, Charles R; Collins, James JProceedings of the National Academy of Sciences of the United States of America2009 Jan 271145-5019164565
Protein nuclear magnetic resonance under physiological conditions.Pielak, Gary J; Li, Conggang; Miklos, Andrew C; Schlesinger, Alexander P; Slade, Kristin M; Wang, Gui-Fang; Zigoneanu, Imola GBiochemistry2009 Jan 20226-3419113834
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays.Fu, Fengli; Sander, Jeffry D; Maeder, Morgan; Thibodeau-Beganny, Stacey; Joung, J Keith; Dobbs, Drena; Miller, Leslie; Voytas, Daniel FNucleic acids research2009 JanD279-8318812396
The differentiation of embryonic stem cells seeded on electrospun nanofibers into neural lineages.Xie, Jingwei; Willerth, Stephanie M; Li, Xiaoran; Macewan, Matthew R; Rader, Allison; Sakiyama-Elbert, Shelly E; Xia, YounanBiomaterials2009 Jan354-6218930315
Shape-controlled synthesis of metal nanocrystals: simple chemistry meets complex physics?Xia, Younan; Xiong, Yujie; Lim, Byungkwon; Skrabalak, Sara EAngewandte Chemie (International ed. in English)200960-10319053095
Curvature-induced base pair "slipping" effects in DNA-nanoparticle hybridization.Hill, Haley D; Hurst, Sarah J; Mirkin, Chad ANano letters2009 Jan317-2119072317
Dimers of silver nanospheres: facile synthesis and their use as hot spots for surface-enhanced Raman scattering.Li, Weiyang; Camargo, Pedro H C; Lu, Xianmao; Xia, YounanNano letters2009 Jan485-9019143509
Plug-based microfluidics with defined surface chemistry to miniaturize and control aggregation of amyloidogenic peptides.Meier, Matthias; Kennedy-Darling, Julia; Choi, Se Hoon; Norstrom, Eric M; Sisodia, Sangram S; Ismagilov, Rustem FAngewandte Chemie (International ed. in English)20091487-919152390
A method for direct measurement of protein stability in vivo.Ignatova, Zoya; Gierasch, Lila MMethods in molecular biology (Clifton, N.J.)2009165-7819157083
Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).Foley, Jonathan E; Yeh, Jing-Ruey J; Maeder, Morgan L; Reyon, Deepak; Sander, Jeffry D; Peterson, Randall T; Joung, J KeithPloS one2009e434819198653
Isolating and probing the hot spot formed between two silver nanocubes.Camargo, Pedro H C; Rycenga, Matthew; Au, Leslie; Xia, YounanAngewandte Chemie (International ed. in English)20092180-419199309
Olfactory behavioral testing in the adult mouse.Witt, Rochelle M; Galligan, Meghan M; Despinoy, Jennifer R; Segal, RosalindJournal of visualized experiments : JoVE200919229182
Surprisingly long-range surface-enhanced Raman scattering (SERS) on Au-Ni multisegmented nanowires.Wei, Wei; Li, Shuzhou; Millstone, Jill E; Banholzer, Matthew J; Chen, Xiaodong; Xu, Xiaoyang; Schatz, George C; Mirkin, Chad AAngewandte Chemie (International ed. in English)20094210-219431164
BRNI: Modular analysis of transcriptional regulatory programs.Nachman, Iftach; Regev, AvivBMC bioinformatics200915519457258
Genetic architecture of intrinsic antibiotic susceptibility.Girgis, Hany S; Hottes, Alison K; Tavazoie, SaeedPloS one2009e562919462005
Concentration and length dependence of DNA looping in transcriptional regulation.Han, Lin; Garcia, Hernan G; Blumberg, Seth; Towles, Kevin B; Beausang, John F; Nelson, Philip C; Phillips, RobPloS one2009e562119479049
Etching and growth: an intertwined pathway to silver nanocrystals with exotic shapes.Cobley, Claire M; Rycenga, Matthew; Zhou, Fei; Li, Zhi-Yuan; Xia, YounanAngewandte Chemie (International ed. in English)20094824-719479923
Advances in light microscopy for neuroscience.Wilt, Brian A; Burns, Laurie D; Wei Ho, Eric Tatt; Ghosh, Kunal K; Mukamel, Eran A; Schnitzer, Mark JAnnual review of neuroscience2009435-50619555292
Microfluidic confinement of single cells of bacteria in small volumes initiates high-density behavior of quorum sensing and growth and reveals its variability.Boedicker, James Q; Vincent, Meghan E; Ismagilov, Rustem FAngewandte Chemie (International ed. in English)20095908-1119565587
First-principles calculation of DNA looping in tethered particle experiments.Towles, Kevin B; Beausang, John F; Garcia, Hernan G; Phillips, Rob; Nelson, Philip CPhysical biology200902500119571369
Plasmon-mediated synthesis of silver triangular bipyramids.Zhang, Jian; Li, Shuzhou; Wu, Jinsong; Schatz, George C; Mirkin, Chad AAngewandte Chemie (International ed. in English)20097787-9119760687
Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays.Maeder, Morgan L; Thibodeau-Beganny, Stacey; Sander, Jeffry D; Voytas, Daniel F; Joung, J KeithNature protocols20091471-50119798082
Fine tuning the optical properties of Au-Ag nanocages by selectively etching Ag with oxygen and a water-soluble thiol.Cho, Eun Chul; Cobley, Claire M; Rycenga, Matthew; Xia, YounanJournal of materials chemistry2009 Jan 16317-632019829745
A probabilistic framework for learning robust common spatial patterns.Wu, Wei; Chen, Zhe; Gao, Shangkai; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20094658-6119963618
Linear and nonlinear quantification of respiratory sinus arrhythmia during propofol general anesthesia.Chen, Zhe; Purdon, Patrick L; Pierce, Eric T; Harrell, Grace; Walsh, John; Salazar, Andres F; Tavares, Casie L; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20095336-919963899
A statistical model for multiphoton calcium imaging of the brain.Malik, Wasim Q; Schummers, James; Sur, Mriganka; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20097002-519964727
A regularized point process generalized linear model for assessing the functional connectivity in the cat motor cortex.Chen, Zhe; Putrino, David F; Ba, Demba E; Ghosh, Soumya; Barbieri, Riccardo; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20095006-919965032
Targeted mutagenesis in zebrafish using customized zinc-finger nucleases.Foley, Jonathan E; Maeder, Morgan L; Pearlberg, Joseph; Joung, J Keith; Peterson, Randall T; Yeh, Jing-Ruey JNature protocols20091855-6720010934
Probing the photothermal effect of gold-based nanocages with surface-enhanced Raman scattering (SERS).Rycenga, Matthew; Wang, Zhipeng; Gordon, Eric; Cobley, Claire M; Schwartz, Andrea G; Lo, Cynthia S; Xia, YounanAngewandte Chemie (International ed. in English)20099924-720014343
Genetic structure in African populations: implications for human demographic history.Lambert, C A; Tishkoff, S ACold Spring Harbor symposia on quantitative biology2009395-40220453204
Networking opportunities for bacteria.Dwyer, Daniel J; Kohanski, Michael A; Collins, James JCell2008 Dec 261153-619109881
Alpha-Synuclein conformation affects its tyrosine-dependent oxidative aggregation.Ruf, Rebecca A S; Lutz, Evan A; Zigoneanu, Imola G; Pielak, Gary JBiochemistry2008 Dec 2313604-919049426
Label-free biomedical imaging with high sensitivity by stimulated Raman scattering microscopy.Freudiger, Christian W; Min, Wei; Saar, Brian G; Lu, Sijia; Holtom, Gary R; He, Chengwei; Tsai, Jason C; Kang, Jing X; Xie, X SunneyScience (New York, N.Y.)2008 Dec 191857-6119095943
Traction stress in focal adhesions correlates biphasically with actin retrograde flow speed.Gardel, Margaret L; Sabass, Benedikt; Ji, Lin; Danuser, Gaudenz; Schwarz, Ulrich S; Waterman, Clare MThe Journal of cell biology2008 Dec 15999-100519075110
Biophysics. Clutch dynamics.Aratyn-Schaus, Yvonne; Gardel, Margaret LScience (New York, N.Y.)2008 Dec 121646-719074337
Potential network mechanisms mediating electroencephalographic beta rhythm changes during propofol-induced paradoxical excitation.McCarthy, Michelle M; Brown, Emery N; Kopell, NancyThe Journal of neuroscience : the official journal of the Society for Neuroscience2008 Dec 1013488-50419074022
Homozygous missense N629D hERG (KCNH2) potassium channel mutation causes developmental defects in the right ventricle and its outflow tract and embryonic lethality.Teng, Guo Qi; Zhao, Xian; Lees-Miller, James P; Quinn, F Russell; Li, Pin; Rancourt, Derrick E; London, Barry; Cross, James C; Duff, Henry JCirculation research2008 Dec 51483-9118948620
Maternal alloantigens promote the development of tolerogenic fetal regulatory T cells in utero.Mold, Jeff E; Michaelsson, Jakob; Burt, Trevor D; Muench, Marcus O; Beckerman, Karen P; Busch, Michael P; Lee, Tzong-Hae; Nixon, Douglas F; McCune, Joseph MScience (New York, N.Y.)2008 Dec 51562-519056990
Gold nanocages: synthesis, properties, and applications.Skrabalak, Sara E; Chen, Jingyi; Sun, Yugang; Lu, Xianmao; Au, Leslie; Cobley, Claire M; Xia, YounanAccounts of chemical research2008 Dec1587-9518570442
Spatial localization of bacteria controls coagulation of human blood by 'quorum acting'.Kastrup, Christian J; Boedicker, James Q; Pomerantsev, Andrei P; Moayeri, Mahtab; Bian, Yao; Pompano, Rebecca R; Kline, Timothy R; Sylvestre, Patricia; Shen, Feng; Leppla, Stephen H; Tang, Wei-Jen; Ismagilov, Rustem FNature chemical biology2008 Dec742-5019031531
Synthesis and Optical Properties of Cubic Gold Nanoframes.Au, Leslie; Chen, Yeechi; Zhou, Fei; Camargo, Pedro H C; Lim, Byungkwon; Li, Zhi-Yuan; Ginger, David S; Xia, YounanNano research2008 Dec 1441-44920200595
Defined spatial structure stabilizes a synthetic multispecies bacterial community.Kim, Hyun Jung; Boedicker, James Q; Choi, Jang Wook; Ismagilov, Rustem FProceedings of the National Academy of Sciences of the United States of America2008 Nov 2518188-9319011107
Tim-3 expression defines a novel population of dysfunctional T cells with highly elevated frequencies in progressive HIV-1 infection.Jones, R Brad; Ndhlovu, Lishomwa C; Barbour, Jason D; Sheth, Prameet M; Jha, Aashish R; Long, Brian R; Wong, Jessica C; Satkunarajah, Malathy; Schweneker, Marc; Chapman, Joan M; Gyenes, Gabor; Vali, Bahareh; Hyrcza, Martin D; Yue, Feng Yun; Kovacs, Colin;The Journal of experimental medicine2008 Nov 242763-7919001139
Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport.Cuneo, Matthew J; Changela, Anita; Miklos, Aleksandr E; Beese, Lorena S; Krueger, Joanna K; Hellinga, Homme WThe Journal of biological chemistry2008 Nov 2132812-2018723845
Putting Electrospun Nanofibers to Work for Biomedical Research.Xie, Jingwei; Li, Xiaoran; Xia, YounanMacromolecular rapid communications2008 Nov 191775-179220011452
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.Dethlefsen, Les; Huse, Sue; Sogin, Mitchell L; Relman, David APLoS biology2008 Nov 18e28019018661
The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues.Udugamasooriya, D Gomika; Dunham, Geoff; Ritchie, Caroline; Brekken, Rolf A; Kodadek, ThomasBioorganic & medicinal chemistry letters2008 Nov 155892-418653335
Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death.Kohanski, Michael A; Dwyer, Daniel J; Wierzbowski, Jamey; Cottarel, Guillaume; Collins, James JCell2008 Nov 14679-9019013277
The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.Chen, Delai; Du, Wenbin; Liu, Ying; Liu, Weishan; Kuznetsov, Andrey; Mendez, Felipe E; Philipson, Louis H; Ismagilov, Rustem FProceedings of the National Academy of Sciences of the United States of America2008 Nov 416843-818974218
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.Huse, Susan M; Dethlefsen, Les; Huber, Julie A; Mark Welch, David; Welch, David Mark; Relman, David A; Sogin, Mitchell LPLoS genetics2008 Nove100025519023400
Cross-strand split tetra-Cys motifs as structure sensors in a beta-sheet protein.Krishnan, Beena; Gierasch, Lila MChemistry & biology2008 Oct 201104-1518940670
A stochastic single-molecule event triggers phenotype switching of a bacterial cell.Choi, Paul J; Cai, Long; Frieda, Kirsten; Xie, X SunneyScience (New York, N.Y.)2008 Oct 17442-618927393
Surface plasmon-mediated energy transfer in heterogap Au-Ag nanowires.Wei, Wei; Li, Shuzhou; Qin, Lidong; Xue, Can; Millstone, Jill E; Xu, Xiaoyang; Schatz, George C; Mirkin, Chad ANano letters2008 Oct3446-918767888
Activation of tyrosine kinases by mutation of the gatekeeper threonine.Azam, Mohammad; Seeliger, Markus A; Gray, Nathanael S; Kuriyan, John; Daley, George QNature structural & molecular biology2008 Oct1109-1818794843
Membrane mechanics as a probe of ion-channel gating mechanisms.Reeves, Daniel; Ursell, Tristan; Sens, Pierre; Kondev, Jane; Phillips, RobPhysical review. E, Statistical, nonlinear, and soft matter physics2008 Oct04190118999449
'Til death do us part': coming to terms with symbiotic relationships. Forward.Relman, David ANature reviews. Microbiology2008 Oct721-419086265
Disease-specific induced pluripotent stem cells.Park, In-Hyun; Arora, Natasha; Huo, Hongguang; Maherali, Nimet; Ahfeldt, Tim; Shimamura, Akiko; Lensch, M William; Cowan, Chad; Hochedlinger, Konrad; Daley, George QCell2008 Sep 5877-8618691744
Quantification of the benefit from integrating MEG and EEG data in minimum l2-norm estimation.Molins, A; Stufflebeam, S M; Brown, E N; Hamalainen, M SNeuroImage2008 Sep 11069-7718602485
Constructing emotion: the experience of fear as a conceptual act.Lindquist, Kristen A; Barrett, Lisa FeldmanPsychological science2008 Sep898-90318947355
Functional grouping and cortical-subcortical interactions in emotion: a meta-analysis of neuroimaging studies.Kober, Hedy; Barrett, Lisa Feldman; Joseph, Josh; Bliss-Moreau, Eliza; Lindquist, Kristen; Wager, Tor DNeuroImage2008 Aug 15998-103118579414
Neural correlates of novelty and face-age effects in young and elderly adults.Wright, Christopher I; Negreira, Alyson; Gold, Andrea L; Britton, Jennifer C; Williams, Danielle; Barrett, Lisa FeldmanNeuroImage2008 Aug 15956-6818586522
Early alterations of AMPA receptors mediate synaptic potentiation induced by neonatal seizures.Rakhade, Sanjay N; Zhou, Chengwen; Aujla, Paven K; Fishman, Rachel; Sucher, Nikolaus J; Jensen, Frances EThe Journal of neuroscience : the official journal of the Society for Neuroscience2008 Aug 67979-9018685023
Brain correlates of autonomic modulation: combining heart rate variability with fMRI.Napadow, Vitaly; Dhond, Rupali; Conti, Giulia; Makris, Nikos; Brown, Emery N; Barbieri, RiccardoNeuroImage2008 Aug 1169-7718524629
Detecting bacteria and determining their susceptibility to antibiotics by stochastic confinement in nanoliter droplets using plug-based microfluidics.Boedicker, James Q; Li, Liang; Kline, Timothy R; Ismagilov, Rustem FLab on a chip2008 Aug1265-7218651067
Individual differences in learning the affective value of others under minimal conditions.Bliss-Moreau, Eliza; Barrett, Lisa Feldman; Wright, Christopher IEmotion (Washington, D.C.)2008 Aug479-9318729580
Motion processing streams in Drosophila are behaviorally specialized.Katsov, Alexander Y; Clandinin, Thomas RNeuron2008 Jul 31322-3518667159
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.Maeder, Morgan L; Thibodeau-Beganny, Stacey; Osiak, Anna; Wright, David A; Anthony, Reshma M; Eichtinger, Magdalena; Jiang, Tao; Foley, Jonathan E; Winfrey, Ronnie J; Townsend, Jeffrey A; Unger-Wallace, Erica; Sander, Jeffry D; Muller-Lerch, Felix; Fu, FeMolecular cell2008 Jul 25294-30118657511
Rett syndrome-causing mutations in human MeCP2 result in diverse structural changes that impact folding and DNA interactions.Ghosh, Rajarshi P; Horowitz-Scherer, Rachel A; Nikitina, Tatiana; Gierasch, Lila M; Woodcock, Christopher LThe Journal of biological chemistry2008 Jul 1820523-3418499664
Application of dynamic point process models to cardiovascular control.Barbieri, Riccardo; Brown, Emery NBio Systems2008 Jul-Aug120-518515000
Ras-MAPK signaling promotes trophectoderm formation from embryonic stem cells and mouse embryos.Lu, Chi-Wei; Yabuuchi, Akiko; Chen, Lingyi; Viswanathan, Srinivas; Kim, Kitai; Daley, George QNature genetics2008 Jul921-618536715
Zinc-finger nucleases: the next generation emerges.Cathomen, Toni; Joung, J KeithMolecular therapy : the journal of the American Society of Gene Therapy2008 Jul1200-718545224
A peptoid antagonist of VEGF receptor 2 recognizes a 'hotspot' in the extracellular domain distinct from the hormone-binding site.Udugamasooriya, D Gomika; Ritchie, Caroline; Brekken, Rolf A; Kodadek, ThomasBioorganic & medicinal chemistry2008 Jun 156338-4318501615
Central memory CD8+ T cells appear to have a shorter lifespan and reduced abundance as a function of HIV disease progression.Ladell, Kristin; Hellerstein, Marc K; Cesar, Denise; Busch, Robert; Boban, Drina; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2008 Jun 157907-1818523254
Predictive behavior within microbial genetic networks.Tagkopoulos, Ilias; Liu, Yir-Chung; Tavazoie, SaeedScience (New York, N.Y.)2008 Jun 61313-718467556
Delayed orexin signaling consolidates wakefulness and sleep: physiology and modeling.Diniz Behn, C G; Kopell, N; Brown, E N; Mochizuki, T; Scammell, T EJournal of neurophysiology2008 Jun3090-10318417630
High-throughput evaluation of relative cell permeability between peptoids and peptides.Tan, Niclas C; Yu, Peng; Kwon, Yong-Uk; Kodadek, ThomasBioorganic & medicinal chemistry2008 Jun 15853-6118490170
Residue-level interrogation of macromolecular crowding effects on protein stability.Charlton, Lisa M; Barnes, Christopher O; Li, Conggang; Orans, Jillian; Young, Gregory B; Pielak, Gary JJournal of the American Chemical Society2008 May 286826-3018459780
Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: implications for in-cell NMR spectroscopy.Li, Conggang; Charlton, Lisa M; Lakkavaram, Asha; Seagle, Christopher; Wang, Guifang; Young, Gregory B; Macdonald, Jeffrey M; Pielak, Gary JJournal of the American Chemical Society2008 May 216310-118419123
HIV-induced changes in T cell signaling pathways.Schweneker, Marc; Favre, David; Martin, Jeffrey N; Deeks, Steven G; McCune, Joseph MJournal of immunology (Baltimore, Md. : 1950)2008 May 156490-50018453567
Improving biomedical imaging with gold nanocages.Xia, Younan; Skrabalak, Sara ESPIE newsroom2008 May 121200705.113519704778
Bacterial nitric-oxide synthases operate without a dedicated redox partner.Gusarov, Ivan; Starodubtseva, Marina; Wang, Zhi-Qiang; McQuade, Lindsey; Lippard, Stephen J; Stuehr, Dennis J; Nudler, EvgenyThe Journal of biological chemistry2008 May 913140-718316370
Analysis of between-trial and within-trial neural spiking dynamics.Czanner, Gabriela; Eden, Uri T; Wirth, Sylvia; Yanike, Marianna; Suzuki, Wendy A; Brown, Emery NJournal of neurophysiology2008 May2672-9318216233
Roles of beta-turns in protein folding: from peptide models to protein engineering.Marcelino, Anna Marie C; Gierasch, Lila MBiopolymers2008 May380-9118275088
Celebrating the scientific legacy of Elkan R. Blout.Gierasch, Lila M; Deber, Charles M; Brodsky, BarbaraBiopolymers2008 May32318307218
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.Behrens, Sebastian; Losekann, Tina; Pett-Ridge, Jennifer; Weber, Peter K; Ng, Wing-On; Stevenson, Bradley S; Hutcheon, Ian D; Relman, David A; Spormann, Alfred MApplied and environmental microbiology2008 May3143-5018359832
Unexpected failure rates for modular assembly of engineered zinc fingers.Ramirez, Cherie L; Foley, Jonathan E; Wright, David A; Muller-Lerch, Felix; Rahman, Shamim H; Cornu, Tatjana I; Winfrey, Ronnie J; Sander, Jeffry D; Fu, Fengli; Townsend, Jeffrey A; Cathomen, Toni; Voytas, Daniel F; Joung, J KeithNature methods2008 May374-518446154
Orthogonal cross-seeding: an approach to explore protein aggregates in living cells.Hinz, Justyna; Gierasch, Lila M; Ignatova, ZoyaBiochemistry2008 Apr 84196-20018330996
Selective blockade of microRNA processing by Lin28.Viswanathan, Srinivas R; Daley, George Q; Gregory, Richard IScience (New York, N.Y.)2008 Apr 497-10018292307
Comparison of zinc finger nucleases for use in gene targeting in mammalian cells.Pruett-Miller, Shondra M; Connelly, Jon P; Maeder, Morgan L; Joung, J Keith; Porteus, Matthew HMolecular therapy : the journal of the American Society of Gene Therapy2008 Apr707-1718334988
Enhanced plating efficiency of trypsin-adapted human embryonic stem cells is reversible and independent of trisomy 12/17.Chan, Elayne M; Yates, Frank; Boyer, Leah F; Schlaeger, Thorsten M; Daley, George QCloning and stem cells2008 Mar107-1818241122
Growth hormone enhances thymic function in HIV-1-infected adults.Napolitano, Laura A; Schmidt, Diane; Gotway, Michael B; Ameli, Niloufar; Filbert, Erin L; Ng, Myra M; Clor, Julie L; Epling, Lorrie; Sinclair, Elizabeth; Baum, Paul D; Li, Kai; Killian, Marisela Lua; Bacchetti, Peter; McCune, Joseph MThe Journal of clinical investigation2008 Mar1085-9818292808
DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases.Cornu, Tatjana I; Thibodeau-Beganny, Stacey; Guhl, Eva; Alwin, Stephen; Eichtinger, Magdalena; Joung, J Keith; Joung, J K; Cathomen, ToniMolecular therapy : the journal of the American Society of Gene Therapy2008 Feb352-818026168
Phylogenetic fate mapping: theoretical and experimental studies applied to the development of mouse fibroblasts.Salipante, Stephen J; Thompson, James M; Horwitz, Marshall SGenetics2008 Feb967-7718245843
Tailoring the Optical and Catalytic Properties of Gold-Silver Nanoboxes and Nanocages by Introducing Palladium.Cobley, Claire M; Campbell, Dean J; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2008 Feb748-75218568091
Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages.Shatalin, Konstantin; Gusarov, Ivan; Avetissova, Ekaterina; Shatalina, Yelena; McQuade, Lindsey E; Lippard, Stephen J; Nudler, EvgenyProceedings of the National Academy of Sciences of the United States of America2008 Jan 221009-1318215992
High resolution traction force microscopy based on experimental and computational advances.Sabass, Benedikt; Gardel, Margaret L; Waterman, Clare M; Schwarz, Ulrich SBiophysical journal2008 Jan 1207-2017827246
In vivo imaging of mucosal CD4+ T cells using single photon emission computed tomography in a murine model of colitis.Kanwar, Bittoo; Gao, Dong Wei; Hwang, Andrew B; Grenert, James P; Williams, Simon P; Franc, Benjamin; McCune, Joseph MJournal of immunological methods2008 Jan 121-3017964595
Facile synthesis of gold nanoparticles with narrow size distribution by using AuCl or AuBr as the precursor.Lu, Xianmao; Tuan, Hsing-Yu; Korgel, Brian A; Xia, YounanChemistry (Weinheim an der Bergstrasse, Germany)20081584-9118058964
Relationship between T cell activation and CD4+ T cell count in HIV-seropositive individuals with undetectable plasma HIV RNA levels in the absence of therapy.Hunt, Peter W; Brenchley, Jason; Sinclair, Elizabeth; McCune, Joseph M; Roland, Michelle; Page-Shafer, Kimberly; Hsue, Priscilla; Emu, Brinda; Krone, Melissa; Lampiris, Harry; Douek, Daniel; Martin, Jeffrey N; Deeks, Steven GThe Journal of infectious diseases2008 Jan 1126-3318171295
Mechanisms of mitotic spindle assembly and function.Walczak, Claire E; Heald, RebeccaInternational review of cytology2008111-5818275887
The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog.Cuneo, Matthew J; Tian, Yaji; Allert, Malin; Hellinga, Homme WBMC structural biology20082018373848
Amygdala and fusiform gyrus temporal dynamics: responses to negative facial expressions.Britton, Jennifer C; Shin, Lisa M; Barrett, Lisa Feldman; Rauch, Scott L; Wright, Christopher IBMC neuroscience20084418474111
A Comparative Study of Galvanic Replacement Reactions Involving Ag Nanocubes and AuCl(2) or AuCl(4).Au, Leslie; Lu, Xianmao; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)20082517-252218725963
Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation.DiGiulio, Daniel B; Romero, Roberto; Amogan, Harold P; Kusanovic, Juan Pedro; Bik, Elisabeth M; Gotsch, Francesca; Kim, Chong Jai; Erez, Offer; Edwin, Sam; Relman, David APloS one2008e305618725970
Morphological Evolution of Single-Crystal Ag Nanospheres during the Galvanic Replacement Reaction with HAuCl(4).Kim, Mun Ho; Lu, Xianmao; Wiley, Benjamin; Lee, Eric P; Xia, YounanThe journal of physical chemistry. C, Nanomaterials and interfaces20087872-787618787649
Dark-field microscopy studies of single metal nanoparticles: understanding the factors that influence the linewidth of the localized surface plasmon resonance.Hu, Min; Novo, Carolina; Funston, Alison; Wang, Haining; Staleva, Hristina; Zou, Shengli; Mulvaney, Paul; Xia, Younan; Hartland, Gregory VJournal of materials chemistry20081949-196018846243
Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development.Liu, Gwen; Min, Hyeyoung; Yue, Sibiao; Chen, Chang-ZhengPloS one2008e359218974849
Facile synthesis of branched au nanostructures by templating against a self-destructive lattice of magnetic fe nanoparticles.Li, Zhengquan; Li, Weiyang; Camargo, Pedro H C; Xia, YounanAngewandte Chemie (International ed. in English)20089653-618988222
Topographically flat, chemically patterned PDMS stamps made by dip-pen nanolithography.Zheng, Zijian; Jang, Jae-Won; Zheng, Gengfeng; Mirkin, Chad AAngewandte Chemie (International ed. in English)20089951-419012308
Ligand-induced conformational changes in a thermophilic ribose-binding protein.Cuneo, Matthew J; Beese, Lorena S; Hellinga, Homme WBMC structural biology20085019019243
A new mechanism for aging: chemical "age spots" in immortal DNA strands in distributed stem cells.Sherley, James LBreast disease200837-4619029623
Coupled contagion dynamics of fear and disease: mathematical and computational explorations.Epstein, Joshua M; Parker, Jon; Cummings, Derek; Hammond, Ross APloS one2008e395519079607
Chapter 3: A fluorescent window into protein folding and aggregation in cells.Ignatova, Zoya; Gierasch, Lila MMethods in cell biology200859-7019118672
Chapter 19: Mechanical response of cytoskeletal networks.Gardel, Margaret L; Kasza, Karen E; Brangwynne, Clifford P; Liu, Jiayu; Weitz, David AMethods in cell biology2008487-51919118688
Instantaneous frequency and amplitude modulation of EEG in the hippocampus reveals state dependent temporal structure.Nguyen, David P; Barbieri, Riccardo; Wilson, Matthew A; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20081711-519163009
Characterizing nonlinear heartbeat dynamics within a point process framework.Chen, Zhe; Brown, Emery N; Barbieri, RiccardoConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference20082781-419163282
Assessment of hippocampal and autonomic neural activity by point process models.Barbieri, Riccardo; Chen, Zhe; Brown, Emery NConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference2008367919163509
Facile synthesis of tadpole-like nanostructures consisting of Au heads and Pd tails.Camargo, Pedro H C; Xiong, Yujie; Ji, Li; Zuo, Jian M; Xia, YounanJournal of the American Chemical Society2007 Dec 1915452-318027954
Nano-flares: probes for transfection and mRNA detection in living cells.Seferos, Dwight S; Giljohann, David A; Hill, Haley D; Prigodich, Andrew E; Mirkin, Chad AJournal of the American Chemical Society2007 Dec 1915477-918034495
In-cell aggregation of a polyglutamine-containing chimera is a multistep process initiated by the flanking sequence.Ignatova, Zoya; Thakur, Ashwani K; Wetzel, Ronald; Gierasch, Lila MThe Journal of biological chemistry2007 Dec 1436736-4317942400
Nonenzymatic detection of bacterial genomic DNA using the bio bar code assay.Hill, Haley D; Vega, Rafael A; Mirkin, Chad AAnalytical chemistry2007 Dec 19218-2317927207
Photoacoustic tomography of a rat cerebral cortex in vivo with au nanocages as an optical contrast agent.Yang, Xinmai; Skrabalak, Sara E; Li, Zhi-Yuan; Xia, Younan; Wang, Lihong VNano letters2007 Dec3798-80218020475
Nanodisk codes.Qin, Lidong; Banholzer, Matthew J; Millstone, Jill E; Mirkin, Chad ANano letters2007 Dec3849-5318041858
Versatile, fully automated, microfluidic cell culture system.Gomez-Sjoberg, Rafael; Leyrat, Anne A; Pirone, Dana M; Chen, Christopher S; Quake, Stephen RAnalytical chemistry2007 Nov 158557-6317953452
Periodate-triggered cross-linking reveals Sug2/Rpt4 as the molecular target of a peptoid inhibitor of the 19S proteasome regulatory particle.Lim, Hyun-Suk; Cai, Di; Archer, Chase T; Kodadek, ThomasJournal of the American Chemical Society2007 Oct 3112936-717929816
Neurotech for neuroscience: unifying concepts, organizing principles, and emerging tools.Silver, Rae; Boahen, Kwabena; Grillner, Sten; Kopell, Nancy; Olsen, Kathie LThe Journal of neuroscience : the official journal of the Society for Neuroscience2007 Oct 3111807-1917978017
Suppression of SIV-specific CD4+ T cells by infant but not adult macaque regulatory T cells: implications for SIV disease progression.Hartigan-O'Connor, Dennis J; Abel, Kristina; McCune, Joseph MThe Journal of experimental medicine2007 Oct 292679-9217954571
Gold Nanocages for Biomedical Applications.Skrabalak, Sara E; Chen, Jingyi; Au, Leslie; Lu, Xianmao; Li, Xingde; Xia, YounanAdvanced materials (Deerfield Beach, Fla.)2007 Oct 173177-318418648528
Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein.Tian, Yaji; Cuneo, Matthew J; Changela, Anita; Hocker, Birte; Beese, Lorena S; Hellinga, Homme WProtein science : a publication of the Protein Society2007 Oct2240-5017766373
Gold nanocages for cancer detection and treatment.Skrabalak, Sara E; Au, Leslie; Lu, Xianmao; Li, Xingde; Xia, YounanNanomedicine (London, England)2007 Oct657-6817976028
Loss of T cell responses following long-term cryopreservation.Owen, Rachel E; Sinclair, Elizabeth; Emu, Brinda; Heitman, John W; Hirschkorn, Dale F; Epling, C Lorrie; Tan, Qi Xuan; Custer, Brian; Harris, Jeffery M; Jacobson, Mark A; McCune, Joseph M; Martin, Jeffery N; Hecht, Frederick M; Deeks, Steven G; Norris, PhJournal of immunological methods2007 Sep 3093-11517707394
Real-time observations of single bacteriophage lambda DNA ejections in vitro.Grayson, Paul; Han, Lin; Winther, Tabita; Phillips, RobProceedings of the National Academy of Sciences of the United States of America2007 Sep 1114652-717804798
Human alpha B-crystallin mutation causes oxido-reductive stress and protein aggregation cardiomyopathy in mice.Rajasekaran, Namakkal S; Connell, Patrice; Christians, Elisabeth S; Yan, Liang-Jun; Taylor, Ryan P; Orosz, Andras; Zhang, Xiu Q; Stevenson, Tamara J; Peshock, Ronald M; Leopold, Jane A; Barry, William H; Loscalzo, Joseph; Odelberg, Shannon J; Benjamin, IvCell2007 Aug 10427-3917693254
Microarray detection of duplex and triplex DNA binders with DNA-modified gold nanoparticles.Lytton-Jean, Abigail K R; Han, Min Su; Mirkin, Chad AAnalytical chemistry2007 Aug 16037-4117614366
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.Sander, Jeffry D; Zaback, Peter; Joung, J Keith; Voytas, Daniel F; Dobbs, DrenaNucleic acids research2007 JulW599-60517526515
Silver nanoparticle-oligonucleotide conjugates based on DNA with triple cyclic disulfide moieties.Lee, Jae-Seung; Lytton-Jean, Abigail K R; Hurst, Sarah J; Mirkin, Chad ANano letters2007 Jul2112-517571909
Identification of a peptoid inhibitor of the proteasome 19S regulatory particle.Lim, Hyun-Suk; Archer, Chase T; Kodadek, ThomasJournal of the American Chemical Society2007 Jun 277750-117536803
Dynamic interconversion of amorphous microparticles and crystalline rods in salen-based homochiral infinite coordination polymers.Jeon, You-Moon; Heo, Jungseok; Mirkin, Chad AJournal of the American Chemical Society2007 Jun 207480-117523645
Fabrication of cubic nanocages and nanoframes by dealloying Au/Ag alloy nanoboxes with an aqueous etchant based on Fe(NO3)3 or NH4OH.Lu, Xianmao; Au, Leslie; McLellan, Joseph; Li, Zhi-Yuan; Marquez, Manuel; Xia, YounanNano letters2007 Jun1764-917489641
Probing transcription factor dynamics at the single-molecule level in a living cell.Elf, Johan; Li, Gene-Wei; Xie, X SunneyScience (New York, N.Y.)2007 May 251191-417525339
Antiviral antibodies are necessary for control of simian immunodeficiency virus replication.Miller, Christopher J; Genesca, Meritxell; Abel, Kristina; Montefiori, David; Forthal, Donald; Bost, Kristen; Li, Jun; Favre, David; McCune, Joseph MJournal of virology2007 May5024-3517329327
Immuno gold nanocages with tailored optical properties for targeted photothermal destruction of cancer cells.Chen, Jingyi; Wang, Danling; Xi, Jiefeng; Au, Leslie; Siekkinen, Andy; Warsen, Addie; Li, Zhi-Yuan; Zhang, Hui; Xia, Younan; Li, XingdeNano letters2007 May1318-2217430005
Cooperative gating and spatial organization of membrane proteins through elastic interactions.Ursell, Tristan; Huang, Kerwyn Casey; Peterson, Eric; Phillips, RobPLoS computational biology2007 Maye8117480116
Vibrational response of Au-Ag nanoboxes and nanocages to ultrafast laser-induced heating.Petrova, Hristina; Lin, Chien-Hua; Hu, Min; Chen, Jingyi; Siekkinen, Andrew R; Xia, Younan; Sader, John E; Hartland, Gregory VNano letters2007 Apr1059-6317358093
Measuring flux distributions for diffusion in the small-numbers limit.Seitaridou, Effrosyni; Inamdar, Mandar M; Phillips, Rob; Ghosh, Kingshuk; Dill, KenThe journal of physical chemistry. B2007 Mar 82288-9217295536
Protein fabrication automation.Cox, J Colin; Lape, Janel; Sayed, Mahmood A; Hellinga, Homme WProtein science : a publication of the Protein Society2007 Mar379-9017242375
Local encoding of computationally designed enzyme activity.Allert, Malin; Dwyer, Mary A; Hellinga, Homme WJournal of molecular biology2007 Feb 23945-5317196220
Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.Garcia, Hernan G; Grayson, Paul; Han, Lin; Inamdar, Mandar; Kondev, Jane; Nelson, Philip C; Phillips, Rob; Widom, Jonathan; Wiggins, Paul ABiopolymers2007 Feb 5115-3017103419
Human CD4+ regulatory T cells express lower levels of the IL-7 receptor alpha chain (CD127), allowing consistent identification and sorting of live cells.Hartigan-O'Connor, Dennis J; Poon, Chungkee; Sinclair, Elizabeth; McCune, Joseph MJournal of immunological methods2007 Jan 3041-5217173927
From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein.Ignatova, Zoya; Krishnan, Beena; Bombardier, Jeffrey P; Marcelino, Anna Marie C; Hong, Jiang; Gierasch, Lila MBiopolymers2007157-6317206628
Site-specific fluorescent labeling of poly-histidine sequences using a metal-chelating cysteine.Krishnan, Beena; Szymanska, Aneta; Gierasch, Lila MChemical biology & drug design2007 Jan31-4017313455
Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method.Meng, Xiangdong; Thibodeau-Beganny, Stacey; Jiang, Tao; Joung, J Keith; Wolfe, Scot ANucleic acids research2007e8117537811
Facile synthesis of Ag nanocubes and Au nanocages.Skrabalak, Sara E; Au, Leslie; Li, Xingde; Xia, YounanNature protocols20072182-9017853874
Effects of osmolytes on protein folding and aggregation in cells.Ignatova, Zoya; Gierasch, Lila MMethods in enzymology2007355-7217875429
Engineering Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection system.Thibodeau-Beganny, Stacey; Joung, J KeithMethods in molecular biology (Clifton, N.J.)2007317-3418314590
Correlated Rayleigh Scattering Spectroscopy and Scanning Electron Microscopy Studies of Au-Ag Bimetallic Nanoboxes and Nanocages.Hu, Min; Chen, Jingyi; Marquez, Manuel; Xia, Younan; Hartland, Gregory VThe journal of physical chemistry. C, Nanomaterials and interfaces200712558-1256518629346
The bacterial two-hybrid system as a reporter system for analyzing protein-protein interactions.Giesecke, Astrid V; Joung, J KeithCSH protocols2007pdb.prot467221357036
Supramolecular allosteric cofacial porphyrin complexes.Oliveri, Christopher G; Gianneschi, Nathan C; Nguyen, SonBinh T; Mirkin, Chad A; Stern, Charlotte L; Wawrzak, Zdzislaw; Pink, MarenJournal of the American Chemical Society2006 Dec 2016286-9617165783
Maximizing DNA loading on a range of gold nanoparticle sizes.Hurst, Sarah J; Lytton-Jean, Abigail K R; Mirkin, Chad AAnalytical chemistry2006 Dec 158313-817165821
Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses.Hsue, Priscilla Y; Hunt, Peter W; Sinclair, Elizabeth; Bredt, Barry; Franklin, Arlana; Killian, Maudi; Hoh, Rebecca; Martin, Jeffrey N; McCune, Joseph M; Waters, David D; Deeks, Steven GAIDS (London, England)2006 Nov 282275-8317117013
Direct measurement of T-cell receptor repertoire diversity with AmpliCot.Baum, Paul D; McCune, Joseph MNature methods2006 Nov895-90117060913
Dip-pen nanolithography of high-melting-temperature molecules.Huang, Ling; Chang, Yu-Hsu; Kakkassery, Joseph J; Mirkin, Chad AThe journal of physical chemistry. B2006 Oct 2620756-817048882
Prevalence of CXCR4 tropism among antiretroviral-treated HIV-1-infected patients with detectable viremia.Hunt, Peter W; Harrigan, P Richard; Huang, Wei; Bates, Michael; Williamson, David W; McCune, Joseph M; Price, Richard W; Spudich, Serena S; Lampiris, Harry; Hoh, Rebecca; Leigler, Teri; Martin, Jeffrey N; Deeks, Steven GThe Journal of infectious diseases2006 Oct 1926-3016960780
Cytotrophoblast induction of arterial apoptosis and lymphangiogenesis in an in vivo model of human placentation.Red-Horse, Kristy; Rivera, Jose; Schanz, Andrea; Zhou, Yan; Winn, Virginia; Kapidzic, Mirhan; Maltepe, Emin; Okazaki, Kelly; Kochman, Ronit; Vo, Kim Chi; Giudice, Linda; Erlebacher, Adrian; McCune, Joseph M; Stoddart, Cheryl A; Fisher, Susan JThe Journal of clinical investigation2006 Oct2643-5216998586
The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites.Cuneo, Matthew J; Changela, Anita; Warren, Joshua J; Beese, Lorena S; Hellinga, Homme WJournal of molecular biology2006 Sep 15259-7016904687
Separation of tricomponent protein mixtures with triblock nanorods.Oh, Byung-Keun; Park, Sungho; Millstone, Jill E; Lee, Seung Woo; Lee, Ki-Bum; Mirkin, Chad AJournal of the American Chemical Society2006 Sep 1311825-916953622
Binding and signaling of surface-immobilized reagentless fluorescent biosensors derived from periplasmic binding proteins.de Lorimier, Robert M; Tian, Yaji; Hellinga, Homme WProtein science : a publication of the Protein Society2006 Aug1936-4416823040
Asymmetric functionalization of gold nanoparticles with oligonucleotides.Xu, Xiaoyang; Rosi, Nathaniel L; Wang, Yuhuang; Huo, Fengwei; Mirkin, Chad AJournal of the American Chemical Society2006 Jul 269286-716848436
Dynamics of DNA ejection from bacteriophage.Inamdar, Mandar M; Gelbart, William M; Phillips, RobBiophysical journal2006 Jul 15411-2016679360
Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates.Rizk, Shahir S; Cuneo, Matthew J; Hellinga, Homme WProtein science : a publication of the Protein Society2006 Jul1745-5116751609
Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing.Liu, Jian; Williams, Brian A; Gwirtz, Richele M; Wold, Barbara J; Quake, StephenAngewandte Chemie (International ed. in English)2006 May 263618-2316639763
Triple-Decker Complexes Formed via the Weak Link Approach.Jeon, You-Moon; Heo, Jungseok; Brown, Aaron M; Mirkin, Chad AOrganometallics2006 May 222729-273219060957
Regulation of T cell responses in the developing human fetus.Michaelsson, Jakob; Mold, Jeff E; McCune, Joseph M; Nixon, Douglas FJournal of immunology (Baltimore, Md. : 1950)2006 May 155741-816670279
The effect of genome length on ejection forces in bacteriophage lambda.Grayson, Paul; Evilevitch, Alex; Inamdar, Mandar M; Purohit, Prashant K; Gelbart, William M; Knobler, Charles M; Phillips, RobVirology2006 May 10430-616469346
A gold nanoparticle based approach for screening triplex DNA binders.Han, Min Su; Lytton-Jean, Abigail K R; Mirkin, Chad AJournal of the American Chemical Society2006 Apr 194954-516608320
Volume-exclusion effects in tethered-particle experiments: bead size matters.Segall, Darren E; Nelson, Philip C; Phillips, RobPhysical review letters2006 Mar 308830616606235
Multipole plasmon resonances in gold nanorods.Payne, Emma Kathryn; Shuford, Kevin L; Park, Sungho; Schatz, George C; Mirkin, Chad AThe journal of physical chemistry. B2006 Feb 92150-416471797
Counter-selectable marker for bacterial-based interaction trap systems.Meng, Xiangdong; Smith, Robin M; Giesecke, Astrid V; Joung, J Keith; Wolfe, Scot ABioTechniques2006 Feb179-8416526407
Teaching the principles of statistical dynamics.Ghosh, Kingshuk; Dill, Ken A; Inamdar, Mandar M; Seitaridou, Effrosyni; Phillips, RobAmerican journal of physics2006 Feb 1123-13323585693
Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers.Giesecke, Astrid V; Fang, Rui; Joung, J KeithMolecular systems biology20062006.201116732192
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.Wright, David A; Thibodeau-Beganny, Stacey; Sander, Jeffry D; Winfrey, Ronnie J; Hirsh, Andrew S; Eichtinger, Magdalena; Fu, Fengli; Porteus, Matthew H; Dobbs, Drena; Voytas, Daniel F; Joung, J KeithNature protocols20061637-5217406455
Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa.Vallet-Gely, Isabelle; Donovan, Katherine E; Fang, Rui; Joung, J Keith; Dove, Simon LProceedings of the National Academy of Sciences of the United States of America2005 Aug 211082-716043713
A combined yeast/bacteria two-hybrid system: development and evaluation.Serebriiskii, Ilya G; Fang, Rui; Latypova, Ekaterina; Hopkins, Richard; Vinson, Charles; Joung, J Keith; Golemis, Erica AMolecular & cellular proteomics : MCP2005 Jun819-2615781424
Transcriptional regulation by the numbers: applications.Bintu, Lacramioara; Buchler, Nicolas E; Garcia, Hernan G; Gerland, Ulrich; Hwa, Terence; Kondev, Jane; Kuhlman, Thomas; Phillips, RobCurrent opinion in genetics & development2005 Apr125-3515797195
Exact theory of kinkable elastic polymers.Wiggins, Paul A; Phillips, Rob; Nelson, Philip CPhysical review. E, Statistical, nonlinear, and soft matter physics2005 Feb02190915783354
Allosteric inhibition of zinc-finger binding in the major groove of DNA by minor-groove binding ligands.Nguyen-Hackley, Doan H; Ramm, Elizabeth; Taylor, Christina M; Joung, J Keith; Dervan, Peter B; Pabo, Carl OBiochemistry2004 Apr 63880-9015049695
High-throughput beta-galactosidase assay for bacterial cell-based reporter systems.Thibodeau, Stacey A; Fang, Rui; Joung, J KeithBioTechniques2004 Mar410-515038156
An improved strategy for constructing "designer" Cys2His2 zinc finger proteins.Thibodeau, Stacey A; Joung, J KeithDiscovery medicine2003 Dec32-520705034
Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.Hurt, Jessica A; Thibodeau, Stacey A; Hirsh, Andrew S; Pabo, Carl O; Joung, J KeithProceedings of the National Academy of Sciences of the United States of America2003 Oct 1412271-614527993
Identifying and modifying protein-DNA and protein-protein interactions using a bacterial two-hybrid selection system.Joung, J KJournal of cellular biochemistry. Supplement200153-711842428
A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions.Joung, J K; Ramm, E I; Pabo, C OProceedings of the National Academy of Sciences of the United States of America2000 Jun 207382-710852947
Activation of prokaryotic transcription through arbitrary protein-protein contacts.Dove, S L; Joung, J K; Hochschild, ANature1997 Apr 10627-309121589
Genetic strategy for analyzing specificity of dimer formation: Escherichia coli cyclic AMP receptor protein mutant altered in its dimerization specificity.Joung, J K; Chung, E H; King, G; Yu, C; Hirsh, A S; Hochschild, AGenes & development1995 Dec 12986-967498794
Synergistic activation of transcription by bacteriophage lambda cI protein and E. coli cAMP receptor protein.Joung, J K; Koepp, D M; Hochschild, AScience (New York, N.Y.)1994 Sep 231863-68091212
Synergistic activation of transcription by Escherichia coli cAMP receptor protein.Joung, J K; Le, L U; Hochschild, AProceedings of the National Academy of Sciences of the United States of America1993 Apr 13083-77681995
Structural and functional characterization of human immunodeficiency virus tat protein.Ruben, S; Perkins, A; Purcell, R; Joung, K; Sia, R; Burghoff, R; Haseltine, W A; Rosen, C AJournal of virology1989 Jan1-82535718
Activation of actin-cardiac myosin subfragment 1 MgATPase rate by Ca2+ shows cooperativity intrinsic to the thin filament.Tobacman, L SBiochemistry1987 Jan 27492-72950924


Up to Top